Acidaminococcus fermentans: Acfer_0454
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Entry
Acfer_0454 CDS
T01151
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
afn
Acidaminococcus fermentans
Pathway
afn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acfer_0454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afn03019
]
Acfer_0454
03016 Transfer RNA biogenesis [BR:
afn03016
]
Acfer_0454
Enzymes [BR:
afn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Acfer_0454
Messenger RNA biogenesis [BR:
afn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Acfer_0454
Transfer RNA biogenesis [BR:
afn03016
]
Prokaryotic type
tRNA degradation factors
Acfer_0454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
Mug135_C
S1_2
Motif
Other DBs
NCBI-ProteinID:
ADB46857
UniProt:
D2RIF5
LinkDB
All DBs
Position
535883..537955
Genome browser
AA seq
690 aa
AA seq
DB search
MHSFSTDFGGRTLTIETGKIAKQANGAVLVRYGETAVVVAATGTDTPREGVDFFPLTVDF
EEKMYAVGKIPGGFLRREGRPAETAILTSRLIDRPIRPMFPDGYHNDVQIVCTAVSVDPD
NAPDIPAMIGASCALSISDIPFEGPIAGVRVGLIDGQFIVEPTVEQAKVSELNLAVAGTK
DAILMVEAGAKEVSEEVMLDAIWFAHGEIKKLVEFQEKIQAEVGKPKMDFEVYTPPEELA
KEIEAYGEPKIHDALMDPDKLHRDKMVSEAKEEILAHFTELYPDNEIDIAHVVAKLVKRV
FRHIITVDKIRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQN
LETLAGDIQKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEEFPYT
IRLVSEVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGENFTILTDIQGL
EDANGDMDFKVAGTSKGITAIQMDIKVDGLTKDILQAALAQAKKGRAFILGKMLECIAEP
RKQLKKYAPKITTIKVNPEKIKDIIGPGGKIIKKIVEDTGAQIDINDDGTVYIAAADSES
ADAAIKTIQDITAEPEVGKIYTGKVTRIMNFGAFVEFMPGREGLVHISQLAKERVEKVED
VVNVGDEIVVKLVEIDSKGRLNLSRKACLK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcatagttttagcacggattttggaggccggacccttaccattgaaaccggtaagatt
gccaaacaggccaatggggctgttctggtccgctacggcgaaaccgccgtggtggtggct
gcaacggggaccgatactcccagggaaggggtggatttcttcccgctgacagtggatttt
gaagaaaaaatgtatgcggtgggcaaaatccccggcgggttcctgcggagagaagggcgg
ccggcagaaacggccatcctgacttcccggctcatcgaccggcccatccgtcccatgttc
ccggacgggtaccacaacgatgtgcagatcgtatgcacggcggtatccgtggatccggac
aacgctccggacattccggccatgatcggtgcatcctgtgccctgtccatttccgatatt
ccctttgaagggcccattgccggtgtgcgggtggggctcatcgacggccagttcattgtg
gaacctacggtggaacaggccaaggtcagcgaactgaacctggcagtggccggcaccaag
gatgccatcctgatggtggaagccggagccaaggaagtttccgaagaagtgatgctggat
gccatctggtttgcccatggggaaatcaagaaactggtggaattccaggaaaagatccag
gcggaagtgggcaagcccaaaatggactttgaggtctacacgcctcctgaagaattggcg
aaggaaatcgaagcctacggggaacccaagatccacgatgccctgatggatccggacaaa
ctgcaccgggacaaaatggtcagcgaagccaaggaagagatcctggcccactttacggaa
ctgtatccggacaatgaaatcgacattgcccatgtggtggccaaactggtgaaacgggta
ttccggcacatcatcaccgtggacaagatccgtccggacggccgtgccctggacgaagtc
cgtcccatcagctgcgaagtgggtctcctggcccgtccgcacggctgcagcctgtttacc
cgtggacagacccaggtgctcaactgcctggctctggcgcctctccgggaagcacagaac
ctggaaaccctggccggcgacatccagaaacggtacatccaccactacaacttcccgccc
tacagcgtgggcgaaaccaaacctctgcgcagcccgggccgccgggaaatcggccatggg
gccctggcagaacgggctttgctgccggtgattccctctgaagaagaattcccctacacc
atccgtctggtgtctgaagtgctggaatctaacgggtcttcctccatggccagcacctgc
gccagcaccctgtccctgatggatgccggcgtgcccatcaaggcgcctgtttccggcgtg
gccatgggcctggtgaaggaaggagaaaacttcaccatcctcaccgatatccaggggctg
gaagatgccaacggggatatggacttcaaggtggccggtacctccaaagggatcaccgcc
atccagatggatatcaaagtggacggactgaccaaggacatcctccaggctgccctggcc
caggccaagaaaggccgtgccttcatcttgggcaagatgctggaatgcattgcggaaccc
cggaaacagctgaagaaatatgcgcccaagatcaccaccatcaaggtgaacccggagaag
atcaaagacatcatcgggcctgggggcaagattatcaagaaaatcgtggaagataccgga
gcccagatcgacatcaacgatgacggcaccgtatacattgccgctgctgacagcgaatct
gctgatgcggccatcaagaccatccaggatatcactgcggaaccggaagtgggcaagatc
tataccggcaaagtgacccggatcatgaacttcggggcctttgtggaattcatgcccggc
cgggaagggctggtacacatttcccagctggccaaggaacgggtggaaaaagtggaagac
gtggtcaatgtgggcgatgaaatcgtggtcaaactggtggaaatcgattccaaaggacgg
ctgaacctgtcccggaaggcttgcttgaaataa
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