Acidaminococcus fermentans: Acfer_0483
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Entry
Acfer_0483 CDS
T01151
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afn
Acidaminococcus fermentans
Pathway
afn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acfer_0483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afn03019
]
Acfer_0483
03009 Ribosome biogenesis [BR:
afn03009
]
Acfer_0483
Enzymes [BR:
afn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Acfer_0483
Messenger RNA biogenesis [BR:
afn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Acfer_0483
Ribosome biogenesis [BR:
afn03009
]
Prokaryotic type
rRNA helicases
Acfer_0483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
SecA_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADB46886
UniProt:
D2RII4
LinkDB
All DBs
Position
565400..566653
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AA seq
417 aa
AA seq
DB search
MAAGFAQLKVDETMVEKLHRTGKDIPTPVQERAIPALLNGRDVIARAQTGVGKTLSFVIP
LFDKVDPQKEFVQALILSPTRELAQQTAGEIRKLEGDTGIRTLTVSGGRDFEEEKRKIGH
RAQVLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTM
MCSATLDEEVRKLGRQLTTNPLVIDIAPKESTASTIHQICIKVSEDHKADALASLIRRYN
PFLMLVFCCSKERAIELSDWLYGEGFNVDVLHGDMSQTKRRQVMENFRKAKLQILVASDI
AARGLDVEGITQVVNYDIPHDPDWYVHRIGRTGRAGSEGTAITFYTADETRWLQNLEKKL
DITLERQNLAGETVRRTVKPVRPKKKRVPKRGKSAVGPNKRGTKYAEASRKQKRKEK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaggttttgcccagctgaaagtggacgaaacgatggtggagaagctccatcgg
acggggaaggacatccccacccctgtacaggagcgtgccatcccggccctcctgaacgga
cgggacgtaatcgcccgtgcccagaccggggtagggaagaccctgtcctttgtgatcccc
ctgtttgataaagtggacccccagaaggaatttgtccaggccctgattctttcccccacc
cgggaactggcccagcagacggccggagagattcggaaactggagggggatacgggcatc
cgcaccctgacagtcagcggcggacgggattttgaagaagaaaaacggaaaatcggacat
cgggcccaggtgctggtggggacccccggccggctgctggaccacctgcggaaagggaac
accagtctgggcggggtaaaatacctggtgctggatgaagtggatgaaatgctccgccag
ggcttcggagaagatatcgaaaccctcctgagcctgatgccccagccccaccagaccatg
atgtgttccgccaccctggatgaggaagtccggaaactgggccggcagctgaccaccaat
cccctggtcatcgacattgcccctaaagaatccaccgcttccaccatccatcagatctgc
atcaaggtcagcgaagaccacaaggccgatgccctggcatccctgatccgccgatacaat
cccttcctgatgctggtgttctgctgcagcaaggaacgggccatcgagctgtctgactgg
ctctacggggaagggttcaatgtggacgtgctccacggggacatgtcccagaccaagcgc
cggcaggtgatggaaaacttccggaaggccaagctccagatcctggtggccagcgacatc
gccgcccgggggctggatgtggaaggcatcacccaggtggtgaactacgacatcccccac
gatccggactggtatgtccatcggatcggccggaccggacgggccggcagcgaagggacg
gccatcacgttctatacggctgatgagacccggtggctccagaatctggaaaagaagctg
gacatcaccctggaacggcagaacctggccggggaaacagtccggcggacggtgaaaccg
gtgcgccccaaaaagaaacgggtgccaaagcggggaaaaagcgccgtggggcccaacaaa
cggggaaccaaatacgcggaagcgtcccggaaacagaaacgcaaggaaaaataa
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