Acidaminococcus fermentans: Acfer_0815
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Entry
Acfer_0815 CDS
T01151
Name
(GenBank) metal dependent phosphohydrolase
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
afn
Acidaminococcus fermentans
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afn03019
]
Acfer_0815
Messenger RNA biogenesis [BR:
afn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Acfer_0815
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HD
Cas3_HD
TraI_2
HD_3
HDOD
Motif
Other DBs
NCBI-ProteinID:
ADB47203
UniProt:
D2RJF1
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Position
947642..948565
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AA seq
307 aa
AA seq
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MIRDLQLGNAMEQPCLVRLQKVGTSSNGKPYAKGLLEDNSGCIPFICFEAGPIGRLRTME
APTPYIIGGKVDVNKYSTTMAYQVIVQKVQAVTEEDDLSDLLPSGHIDLEKYKMEFQAFM
GRIQDDGLRELVETLFSGSTLRQFLKNPAGMRLHHAYVGGLLHHTVCVTRLAVAMSGAIG
GVDLDLVIAGALLHDLGKIREISSDLGFPYTTEGRLMGHISIGAMAVDRAARKIPELSPD
KRERLLHIILSHHGDQDKGSPVVCVTKEAFIVHYADEVDSIMNQFHEKERSETWEYDKML
QRYLWKV
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgatccgagatctgcagctggggaatgccatggaacagccctgtctggtccgcctccag
aaagtggggacctcctccaacggaaagccctatgccaagggcctgctggaggacaacagc
ggctgcattccctttatctgttttgaagctggccccatcggccggctccggaccatggaa
gcccccacaccctatataatcgggggcaaggtggatgtgaacaaatattccaccaccatg
gcctaccaggtgatcgtccagaaggtccaggcggtgacggaagaggacgatttgtccgac
ctgctgcccagcggccacatcgatctggaaaagtacaagatggaattccaggcctttatg
ggccggatccaggatgacgggctgcgggagctggtggaaaccctgttttccgggagcacc
ctccggcagtttttgaagaacccggcagggatgcggctgcaccatgcctacgtgggaggt
cttctccaccatacggtgtgtgttacccgtctggcggtggccatgagcggagccatcgga
ggggtggatctggacctggtaattgccggggccctgctccatgatctggggaagatccgg
gaaatttcttcggatctgggctttccctacaccacggaaggccggctcatggggcatatt
tccatcggagccatggcggtggaccgggctgcccggaaaatcccggaactgtctcctgac
aaacgggaacggctgctccacatcatcctgagccatcatggggaccaggacaagggatct
ccggtggtttgcgttaccaaagaagcctttatcgtccattatgcggatgaagtggattcc
attatgaatcagttccacgaaaaagaacggagcgaaacctgggaatacgacaaaatgtta
cagcggtacctgtggaaggtttga
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