Acidaminococcus fermentans: Acfer_1020
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Entry
Acfer_1020 CDS
T01151
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
afn
Acidaminococcus fermentans
Pathway
afn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acfer_1020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afn03019
]
Acfer_1020
Messenger RNA biogenesis [BR:
afn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Acfer_1020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ADB47390
UniProt:
D2RJY8
LinkDB
All DBs
Position
complement(1152059..1153735)
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AA seq
558 aa
AA seq
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MNNNSKGQQKKLSIIPLGGLGEIGKNMTAFVYGNDMILVDAGLAFPDDDMLGIDLVIPDT
TFLMENKDKFKAIFLTHGHEDHIGALPYVMKDFDVPVYGTPLTLGILSGRLKENGVSDSK
CKMVKPGATVRAGAFRVEFIRVNHSIPDAVALAIHTPVGVIVHTGDYKFDQTPVDGQVTD
YAKLAEVGRKGVLLLMSDSTNIERTGYTPSEKSVGKTLDEQFRLARNRVIVATFSSNVHR
IQQVIDAAVMTRRKVAVIGRSMVNVVNISIEMGYLKVPQGVLIDIDECRNYAPRQIAIIT
TGSQGEPMSALTRMSNSDHRKVSIMPGDTVIISATPIPGNEKGVARTIDNLYKQGAEVIY
GREQGIHVSGHASQEEIKLMHRLVHPKFFMPVHGEYRHLVKHKKLAMQLGMSKDNIVIAE
NGSVVDLTRDSIGISGKVTAGRVLIDGLGVGDVGNVVLRDRRQLSQDGILIVVVTIDHST
YRIAAGPDIVSRGFVYVRESEELMEGARDRVLSTLDKCHENNITEWSALKSAVRDSLGRY
LFEKTRRRPMILPLIMEI
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
ttgaataacaacagcaaaggacaacaaaaaaaattatccatcattccgctgggcggtctg
ggggaaatcggcaagaacatgacggcattcgtctacggcaatgacatgatcctggtggat
gccgggctggcattcccggatgatgacatgctggggatcgatctggtgatcccggatacc
acgttcctgatggaaaacaaggacaaattcaaagccattttcctgacccacggccatgaa
gaccatatcggtgccctgccctatgtgatgaaggatttcgacgtgccggtatatggaacg
cccctgaccctgggcatcctgtccggccgtctgaaggaaaacggcgtttctgacagcaaa
tgcaaaatggtgaaaccgggggctacggtccgggccggcgccttccgggtggaattcatc
cgggtcaaccacagcattcccgatgcggttgctctggccatccataccccggtcggggta
atcgtccacaccggtgactacaagttcgaccagactccggtggacggacaggtgacggac
tacgccaagctggcggaagtgggccgcaaaggggtcctgctgctgatgagcgattccacc
aacattgaacggaccggctacacccccagcgaaaagagcgtgggcaagaccctggatgaa
cagttccggctggcccggaaccgggtgatcgtggccaccttctcctccaatgtacaccgg
atccagcaggtgatcgacgctgcggtgatgacccgccggaaagtggcggtcattggccgg
agcatggtgaacgtggtgaacatttccattgaaatgggctacctgaaagtgccccagggg
gtactgatcgacatcgatgaatgccggaactacgcaccccggcagatcgccatcatcacc
accggcagccagggcgaacccatgagtgccctgacccggatgagcaacagcgatcatcgg
aaggtctccattatgcccggggatacggtgatcatttccgccacccccatccctggcaac
gaaaagggtgtggcccggaccatcgacaacctgtacaaacagggcgcggaggtgatctac
ggacgggaacagggcatccatgtttccggccacgccagccaggaagaaatcaaactgatg
caccgtctggtccatcccaagttcttcatgccggtccacggggaataccgtcatctggtg
aaacacaagaaactggccatgcagctggggatgtccaaggacaatatcgtgattgcggaa
aacgggtccgtggtcgacctgaccagggattccatcgggatctccggcaaagtcaccgcc
ggccgggtgctgatcgacggcctgggcgtgggcgacgtgggcaatgtggtgctccgtgac
cgccggcagctgtcccaggacgggatcctgatcgtggtggtgaccatcgaccacagcacc
taccggattgcagccggtccggatatcgtatcccggggctttgtgtatgtccgggaatcc
gaagaactgatggaaggggcccgggaccgtgtgctgagcaccctggacaaatgccatgaa
aacaacatcaccgaatggtccgcactgaagagtgccgtccgggacagcctgggccggtat
ctgttcgaaaagaccagacggcgtcccatgatcctgcctctgatcatggaaatctga
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