Acidaminococcus fermentans: Acfer_1467
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Entry
Acfer_1467 CDS
T01151
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
afn
Acidaminococcus fermentans
Pathway
afn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Acfer_1467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afn03400
]
Acfer_1467
Enzymes [BR:
afn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Acfer_1467
DNA repair and recombination proteins [BR:
afn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Acfer_1467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
UvrD_C_2
OB_YrrC
AAA_11
HHH_5
Viral_helicase1
HHH
PhoH
Helicase_RecD
UvrD-helicase
UvrD_C
PIF1
nSTAND3
NTPase_1
HHH_2
T2SSE
AAA_16
SLFN-g3_helicase
TrwB_AAD_bind
AAA_28
5_3_exonuc
TsaE
AAA
AAA_29
AAA_22
DEAD
NPHP3_N
AAA_12
AAA_5
Motif
Other DBs
NCBI-ProteinID:
ADB47826
UniProt:
D2RL74
LinkDB
All DBs
Position
complement(1624953..1627118)
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AA seq
721 aa
AA seq
DB search
MAESVTIEITVKNIVFQADTGTFSVFRGENPEVGTISIVYRGQAPYAGEQIRLAGIWGDH
PRFGRQFQAQSWEAVQPRGAEGLVRMLGSGVLKGVGPAMAQRIVDQFGEDTLEVLEKFPE
RLREVSGIGKKKAEAIITSYGELRENRELVFFLESHGISGNFAPRIQALYGSTAVTRISN
NPYCLAEDVEGIGFRTADALARNLGMDEHGDERIRAGIHYTLLQGAGQGHTCVPDSWLVG
NAARVLQVDPLEVRQVFDQLLRDNLLRAEDRGDHVCVYPEYLYRAEEGVAHRLLALRDNV
NALWKVDYQKIIREWERDERIRLAPEQAEAVKASVDHGVFVLTGGPGTGKTTVVKGILSV
MEQAGCKILLAAPTGRAAKRLSESAGKPALTVHRLLEYTPNGEGDSFWGRNEDNPLEADA
VIVDEASMMDIVLMYNLLKALPLGCRLILVGDVDQLPSVGPGSVLQDIIRSGTMPIVRLE
NVFRQAELSPIVRNAHRINQGLMPQWEGEKDFRFREFATEEETMHYIVDLYVHLAARQPQ
DAIQVLTPMHKNLCGVENLNNMLQARMNPPSPEKQEYRGSFLLLREGDKVMQIRNNYDKN
VFNGDIGRICSIQGAHVTVDFPDRAEGEAVTYEGAEVSDLRLAYAMSVHKSQGSEYAVVL
MPLVLSHYILLQRNLFYTAITRAKKQVYLAGSRRALRTAVENDRTRKRYSLLAERLKRYG
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggccgaatccgttaccatcgaaatcactgtcaaaaacatcgtcttccaggcagacaca
ggcaccttcagtgtctttcggggcgagaacccggaagtggggaccatttccatcgtctac
cgggggcaggcgccttatgcgggagagcagatccggctggccgggatctggggggaccat
ccccggttcggccggcagttccaggcccagagctgggaagccgtccagcccaggggggcg
gaaggcctggtgcggatgctgggcagcggagtgctcaagggagtgggcccggccatggcc
cagcggatcgtggaccagttcggggaggacaccctggaggtgctggaaaaattcccggaa
cggctccgggaggtcagcggcatcggcaagaaaaaggcggaagccatcatcacctcctac
ggggaactccgggaaaaccgggagctggtgtttttcctggaaagccacgggatcagcggg
aattttgccccccggatccaggccctctacggcagcacggcggtgacccggatcagcaac
aatccctactgcctggcggaagatgtggaaggcatcgggttccggacggcggacgccctg
gcccggaacctggggatggatgagcacggggacgaacggatccgggcggggatccactat
accctgctccagggggccggccaggggcatacctgcgtgccggattcctggctggtgggc
aatgcggccagggtgctccaggtggaccctctggaagtgcgccaggtgttcgaccagctg
ctccgggacaacctgctccgggcggaggaccggggggaccatgtgtgcgtgtacccggaa
tacctgtaccgggcggaagagggggtggcccaccggctgctggccctccgggacaatgtg
aacgccctgtggaaggtggattaccagaagatcatccgggaatgggaacgggatgaacgg
atccgactggcaccggaacaggcggaagcggtgaaggcttccgtggatcacggggtgttc
gtccttaccgggggcccgggtaccgggaaaaccaccgtggtgaaggggatcctgtcggtg
atggaacaggccggctgcaagatcctgctggcggctcccacgggacgggcggccaagcgg
ctgtcggaaagcgccgggaagccggccctcaccgtgcaccggctgctggaatacactccc
aacggggagggggattccttctggggacggaatgaggacaatcccctggaagccgatgcg
gtgatcgtggacgaagcctccatgatggacatcgtgctcatgtacaacctgctgaaggcc
ctgcccctgggctgccggctgatcctggtgggggacgtggaccagctgcccagcgtgggc
cccggctccgtgctccaggacataatccgcagcggcaccatgcccattgtccgtctggaa
aacgtgttccggcaggcggagctgagccccattgtccggaatgcccaccggatcaaccag
ggactgatgccccagtgggaaggggaaaaggatttccgtttccgggaattcgccacggaa
gaggagaccatgcactacattgtggatctctacgtccatctggccgcccggcagccccag
gacgccatccaggtgctgacccccatgcacaagaacctgtgcggggtggagaacctgaac
aacatgctccaggcccggatgaaccccccgtccccggagaaacaggagtaccggggcagt
ttcctgctgctccgggaaggggacaaggtgatgcagatccggaacaattacgacaagaac
gtgttcaacggggacatcggacggatctgcagcatccagggggcccatgtgaccgtggat
ttcccggatcgggcggaaggggaagcggtgacctatgagggagcggaagtctctgatctg
cggctggcctacgccatgagcgtccacaaaagccagggcagcgaatatgcggtggtgctg
atgcccctggtactgagccactacatcctgctccagcggaacctgttctacaccgccatc
acccgggccaagaagcaggtgtacctggccggcagccggcgggccctgcgcaccgccgtg
gaaaacgaccggacccggaagcgctacagcctcctggcagagcggctgaagcggtatggg
gagtga
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integrated database retrieval system
