Aptenodytes forsteri (emperor penguin): 103902992
Help
Entry
103902992 CDS
T08527
Symbol
SMCHD1
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
afor
Aptenodytes forsteri (emperor penguin)
Brite
KEGG Orthology (KO) [BR:
afor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
afor03036
]
103902992 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
afor03400
]
103902992 (SMCHD1)
Chromosome and associated proteins [BR:
afor03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103902992 (SMCHD1)
DNA repair and recombination proteins [BR:
afor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103902992 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
Big_1
HATPase_c
Motif
Other DBs
NCBI-GeneID:
103902992
NCBI-ProteinID:
XP_009282397
LinkDB
All DBs
Position
Unknown
AA seq
1928 aa
AA seq
DB search
MLLSATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSI
QIKLLFDDSQGKPAVAVIDNGRGMTSKQLNKWAVYRLSKFTRQGDFESDHSGYVRPLPVP
RSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSG
YIRNRKPSDSTHITSDDERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQ
LAHIYHYYIHGPKGNETNAVVKDISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYI
NTAADSFEFKAHVEGEGIVEGIIRYHPFLYDKETYPDDPCFPSKLNDDDDDGDCFIVEKG
ARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLAPVECYNRISGALFTNDKFQVSTN
KLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGVTT
RTDLPSKRMQSPWTMYAAIEWDGKTYKTGQLVKTVKTLPIFYGSIEKFFLYGDHDGDIFA
TGGEVQIALEPQALYAEMKTIPISKLDRTVSDKAVKKYIEDEMARLPXKLSVTWPEGDEL
LPNETRFAGTPIGDLRIVILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPNGTKEIIS
HISQHGGKWPYWFKKMENLQKLEKYTLKLQVVLNESNADTYAGRPLPSKIFKFTIIEGKP
EKFSVGLLELPFRVGVPFNIPLELQDEFGHATQLTTDVKPILEASGLTLQYEEITAGTKC
IIKGVTAKGCINSCQGKNFNLKVTLPGLKEDTQVFKIRLQPGPPRQLKVKPDSEILKIEN
GTAFPFQVEVLDESGNITAQPKLIVHCKFLGASNLPVYSVDCSNAGTNILTGPVIHVQNI
KKDQMLKARIEILSCKDVPPVEKIIKLLPSSHVARLQVLSMDGQKAIQIKHQDEINWVAG
DVMQNLIFQMYDEGEREIHITPAVAEKIKVNWTPRINREQLIQGLLPDVKVPTSVKDVRY
CLITYLDDHVSLESAFTVRPLPDEPKHIKCKLKGPNTLQMGEELQGEIDVMITDQYGNQV
QTVTSACVNSLGVSGPGLDKSNLKIIWQESTLTMRVKGIRFKPCLLGSKELCFAWREFSD
FLRVNLTAGSPAKLQFVDWPELEKPVAVINGRELQKPLIVQLCDQWGNPSPEPNVKISLT
KDNNLKIVPSNQQHKTDENGRANLGVISIHAPRGEHTLQLKASYNKTTLDCPKIILNVLP
DPEKPVRLNVKYDKNTSFPAGGTFPDFVVSVLSEDDNSIKNINPARISMKMWEAQSSGTR
PAIDVTTFSCSKVKDDKEDGFFYFRDKVVPERVGIYCIQFTFAMDMTNMLSSEQIIADVV
PNEPVRLLPDSLPATPAVSNVRTLTSRTLVKDLYLHVMDEYNNHTGIDLVGRIIAKIKSP
NEDDIEIPQFQGKVSTIEFPFDRGSAEINLVLAENSPGRDSTEYILVFEPDLPALKKPLE
PYRLSFMFYNDFKKQQQMAALTRERDQLSHAIGVYRNWFDTTNQLVTEMKCQVKEAETRE
THLKSELKKHQIELPQANTLQYVDSLIKQKILDQEGIMKQPRRTCTLPNYPKGNQDILGK
IAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLP
DWNRPLPHLRNGKIFFRPIGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANH
YRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSGQ
IDLLQQYRAAVVKLDNVNKDLDFHLQSLTTPEMQKKKQELAKQEESLKIIEQKLGMTPSD
KVTESLLQPEMLDMSDTPIPPKRMRRETVKKLYSSEEWISSPTKKQQQQQPLQTSPSELN
GNPRKRKA
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atgctgctttcggcaaccaaggagcggattgacttcctgccccactacgatacacttgtc
aaaagtgggatgtacgagtactatgccagcgaagggcaaaatcctttgccatttgccctt
gctgagttgattgacaattctctgtccgctacatcccgaaatactggtattcggagcata
cagataaaattgttatttgatgactcccaaggaaaaccagctgttgctgtgattgataat
ggaagaggaatgacttctaaacagcttaacaaatgggctgtatatagactgtcaaaattt
acaagacaaggtgacttcgagagtgatcattcaggatatgtacgccctttgccagtgcct
cgtagtttaaatagtgatatctcatattttggagttggaggcaaacaagcagtgttcttc
gttggacagtctgccagaatgataagcaaacctgcagattctcaggatgttcatgaactt
gtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaatatatagtgga
tacattcgaaacaggaagccatctgactctactcacatcacaagtgatgatgaaagattt
cttcataatctaatattggaagaaagggataaagagagtttcacagcagttgtcattaca
ggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttggacaaggcag
ctggcacatatctatcactattatatccatggaccaaaaggaaatgaaactaatgctgta
gtaaaagacataagccctttcaacaacatcgacattcagatttcgatgttcgaaaaagga
aaagtaccaaagattgtcaatcttagggagatcaaagatgacatgcagacattgtatata
aatactgcagcagatagttttgagtttaaggcacatgttgaaggagaaggtatagtggaa
ggcatcatccgatatcatcccttcctatatgataaagaaacataccctgatgatccatgt
tttccatcaaaattaaacgacgatgatgatgatggcgactgctttatagtagaaaagggt
gccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaataccatacaca
actgtggaagattttgactggtgcgctcctccaaagaagagaggattagcaccagttgaa
tgctacaacagaatttctggtgcattgtttaccaatgataagttccaggtcagcacaaac
aaactcactttcatggatctggagctgaagctaaaagataagaatactctgttcacgaga
atcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctttgtggctcaaa
gactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggagtaactaca
cgtactgatttaccatccaaaagaatgcagagcccttggacaatgtatgctgcaatagag
tgggacgggaaaacatacaaaactggacagctggtgaaaactgttaagactcttccaata
ttctatggaagtattgagaaattttttttgtatggagaccatgatggggatatatttgcc
actggaggagaggttcagattgctttggaacctcaggcgttgtatgctgaaatgaaaaca
attccaatctcaaaacttgacagaacagtgtctgacaaagctgttaaaaaatacatagag
gatgaaatggcaagacttccttaaaaattatcagtaacatggcctgaaggagatgagtta
ttaccaaatgaaacaagatttgctggtacaccaataggagacttaagaatagtaattttg
aataaaaaaggagaagcaatgcaaaaacttccgggtacaagccacggaggttcaaagaaa
cttcttgttgaactcaaggttattttacattcacctaatgggacaaaagaaataatttcc
catatcagtcagcatggaggcaaatggccatactggtttaaaaaaatggaaaatcttcag
aaacttgaaaaatacaccttgaaactgcaagtagtattgaatgaaagtaatgcagacact
tatgcaggaaggcctctaccatctaaaatatttaaatttactattatagagggcaaacca
gagaaattttcagtgggtcttttggagcttccttttcgagttggagtaccttttaatatt
cctttggaattgcaggatgaatttggtcatgcaacacagttgacaactgacgttaaacca
attcttgaagctagtggattgacattgcagtatgaagaaataactgcaggaacaaagtgc
atcattaagggtgtcactgctaaaggctgtataaatagttgccagggcaagaactttaat
ctgaaggttactcttcctggtttgaaagaagacacacaagtctttaaaataagattgcag
cctggccctcctcgtcaattgaaagtaaaaccagattctgaaattctaaagattgaaaat
ggtacagctttcccctttcaggttgaagtactggatgaatcgggaaatataacagcacag
ccaaagctgatagttcattgtaagtttttaggtgcttcaaaccttcctgtgtattctgtg
gactgcagtaatgcaggaacaaacattttaactggtccagttatacatgtacagaatatc
aagaaagaccagatgctgaaagcaaggattgaaatacttagttgtaaagatgtgccacca
gtggaaaagattattaaacttcttcctagcagtcatgttgcaagactacaggtcttaagt
atggacggacaaaaagctattcaaattaaacatcaggatgaaattaattgggttgctggc
gatgtcatgcagaaccttatatttcagatgtatgatgaaggagaaagggagatacacata
actccagctgtggcagagaaaatcaaggttaactggacacctagaattaacagagaacag
ttgattcagggattattacctgatgtaaaagtaccaacatcagtaaaagatgtacgttac
tgtctaattacttatcttgatgaccatgtgtctttggagagtgcgttcacagtcaggcca
cttcctgatgaacccaaacacattaagtgtaaattaaaaggaccaaacacactgcagatg
ggtgaagaactgcaaggtgaaattgatgtaatgattacagatcagtatggaaatcaggtt
cagacagtgacatctgcgtgtgtaaattccctaggagtttctgggccgggacttgataaa
tcaaatttgaaaataatttggcaggaaagtactctaacaatgagagtaaaaggtattcgg
tttaaaccttgtttacttggaagcaaagaattgtgcttcgcttggcgtgaattttctgac
tttctcagagtaaatttaactgcaggatcccctgctaaattgcagtttgtggattggcca
gagttagaaaagcctgttgcagtgattaatggtagagaattgcagaagccccttattgtt
cagctgtgtgatcagtggggaaatccatctcctgaacctaatgtcaaaatcagccttaca
aaggataacaacttaaagattgttccttcaaaccagcaacataaaacagatgaaaatggt
agggctaacctgggagttattagtattcatgcacctaggggagagcacactttacagctt
aaagcctcatacaacaagaccacattagattgtcctaaaatcatattaaatgtcctgcct
gatcctgagaaacctgtccgcttgaatgttaaatatgacaaaaatacttcttttccagca
ggaggtaccttccctgattttgtggttagtgttctttctgaagatgacaacagtattaaa
aatattaatccagcacggatttctatgaaaatgtgggaagcacagagcagcggaactagg
ccagcaattgatgttacaacatttagctgtagtaaagtgaaggatgataaggaagatggc
ttcttttacttcagggataaagtggttccagagagagtgggcatatactgtatccagttt
acctttgcaatggatatgacaaatatgctcagcagtgaacagattatagctgacgttgta
cctaatgaacctgtacgcttgttacctgattctttaccagctactccagcagtttccaat
gttcgaactcttactagccgtacactggtcaaggatttatacctccatgtaatggatgaa
tacaacaaccacactggaattgatctagttggcagaataatagcaaaaattaagagcccc
aatgaagatgatatagagatcccacagtttcaggggaaagtcagtacaattgagtttcca
tttgacagaggatcagctgaaattaatctagtgctggctgaaaacagtcctggaagagat
agcactgaatatattcttgtatttgagccagatctgccagctttgaaaaaacctttggaa
ccgtaccgtctgtcatttatgttttacaatgatttcaagaagcagcaacagatggcagca
cttacaagggagagagaccaattatctcacgccataggtgtttacagaaattggtttgat
actactaatcagcttgtaactgaaatgaaatgtcaggttaaagaagctgaaacaagagaa
actcacctgaagagtgaactgaaaaaacaccaaattgaattaccacaggcaaatacactt
cagtatgtggattctcttataaaacaaaagatattggatcaagaaggaataatgaaacag
ccaaggcgaacttgtacgctcccaaactatccaaaaggcaaccaggatattttaggcaag
attgcacatttagcacaaattgaggataacgaagcagcaaaagttatctcttggcatttg
gcaagtgacatggactgtgtagtcacactgactactgaagcggctcgttctatttttgat
gaaactcaaggtcgacaacaagtgttaccccttgattctatttacaagaagacactccct
gattggaacaggcctttacctcacttaagaaatggaaaaatcttcttcagacctattgga
aatcctgtatttgccagagatctgttaacatttccagataatgtagagcattgtcaaaca
gtgtttgggatgctcttgggtgacactatcattatagataacttggatgctgccaaccat
tacagaaaagaggttgtgaaaattacacactgccctactttgctgactagggaaggagac
aggattcgcagcaatggaaaatttggaggccttcagaataaagctcctccaatggacaaa
ctcagaggaatggtatttggagcacccatgccaaaactttactctactttctctggacag
atagatcttcttcagcaataccgtgcagcagtggtgaaacttgataatgtgaataaggac
cttgatttccatttgcagtcacttaccactccagaaatgcaaaagaaaaaacaggaactt
gccaaacaagaggaaagtctcaagataatagaacaaaaattgggtatgactccatcagat
aaagtcactgaatcattgcttcagcctgaaatgttagatatgtctgacacccccatcccc
cccaaaagaatgcgaagagaaacggtaaaaaaattgtatagctcagaagaatggatctcc
tctcccacaaagaagcagcagcaacagcaaccactgcaaacatccccttcagaacttaat
ggaaatccacgaaagagaaaggcatag
DBGET
integrated database retrieval system
