Allofrancisella frigidaquae: E3E15_01980
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Entry
E3E15_01980 CDS
T06608
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
afri
Allofrancisella frigidaquae
Pathway
afri03030
DNA replication
afri03410
Base excision repair
afri03420
Nucleotide excision repair
afri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E3E15_01980 (ligA)
03410 Base excision repair
E3E15_01980 (ligA)
03420 Nucleotide excision repair
E3E15_01980 (ligA)
03430 Mismatch repair
E3E15_01980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afri03032
]
E3E15_01980 (ligA)
03400 DNA repair and recombination proteins [BR:
afri03400
]
E3E15_01980 (ligA)
Enzymes [BR:
afri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E3E15_01980 (ligA)
DNA replication proteins [BR:
afri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E3E15_01980 (ligA)
DNA repair and recombination proteins [BR:
afri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E3E15_01980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3E15_01980 (ligA)
MMR (mismatch excision repair)
DNA ligase
E3E15_01980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E3E15_01980 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
HHH
RNA_ligase
Rnk_N
Motif
Other DBs
NCBI-ProteinID:
QIV94189
UniProt:
A0A6M3HSS8
LinkDB
All DBs
Position
431636..433678
Genome browser
AA seq
680 aa
AA seq
DB search
MTPRTFFYTDYDSLAFAELKSTIDKLADYLSQQSYLYHTLDKPIITDSDYDKLFQLLQSL
VAKHPELTPVNSVLDKVGGKVLEGFETVKHKKKMLSLSNVFSLEELKSFYEKLDFSNVEL
ECEPKMDGLAISIFYKNGRFDYAVTRGDGVQGEKVSENVKTIRNVPLRLNTNSPPKELEV
RGEIILDKASFLALNNYMQEHGQKSFANPRNAAAGSIRMLDSKIVAKRPLKLYCYGVGYY
SKDFEHPPTQYQLMNYLKSLGFTISNHMSLATDFNAIEEYYHQMSHSRADLDYDIDGLVF
KVNDIKLQEAIGYVSRAPKWAVAYKFPAEEVESEVINIEFQVGRTGAITPVARLKSVAVG
GVIVSNATLHNIHEIKRKDIRVGDRVIVRRAGDVIPEVVRSLPKYRKTSVKLIEMPSNCP
VCNSPVENINDQAIYRCTGGWHCQAQTAERLKHFVSRKAMDIDKIGAKLIEQLVRDNLIK
YPADIYKLTFEQLVNLERMGVKSSQNVLDSITNSKNPSLARFIFSIGIKDIGEVSSESLA
NYFGSLEKFRQASFDELISINDIGEIMANNVISFWQDPLNIRIMEDLLNVGIEISNPRKI
EKVTNSNFDNKIIVITGTFEDYSRTDLTQLLKSMGAKVTSSVSKKTDMVICGENAGSKFT
KAQELGVNVVTEDKLKGLLS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacaccaagaacgtttttttatacggattatgatagtttagcttttgctgagttaaaa
tcaactatagataagcttgctgattatcttagtcaacaaagttatctatatcacacatta
gataaaccgataataacagatagtgattatgataaactttttcagcttttacaaagttta
gtcgctaaacaccctgaattaaccccagtaaattcagttttagataaagtaggtggaaaa
gttttagaaggctttgagactgttaagcataagaaaaaaatgctttcactatctaacgta
tttagcttggaagaacttaaaagtttttatgaaaaactcgatttttcaaatgttgaatta
gagtgtgagccaaaaatggacgggcttgctataagcattttttataaaaatggtagattt
gattatgctgtaactagaggtgatggagttcaaggtgaaaaagtttcagaaaatgttaaa
actatccgaaacgtgccattacgattaaatacgaatagcccacctaaggagctagaagta
agaggagagattattttagataaagctagttttttagcacttaataactatatgcaagag
catggtcaaaagagctttgcaaaccctcgtaatgcagctgctggaagtatacgtatgttg
gattctaaaattgtagctaaacgtccgttgaaattatattgttatggagtaggatattat
tctaaagactttgaacaccctcccactcaatatcagcttatgaactaccttaaaagctta
ggttttactataagtaatcatatgagtttagcaactgattttaatgctattgaagaatat
tatcaccaaatgagccatagtagagcagatttggattatgacattgacggtttagttttt
aaagttaatgatattaagcttcaagaggctattggttatgtttcaagagcaccaaagtgg
gctgtagcatataagtttcctgccgaagaagtagaatcagaagttattaatattgagttt
caagtaggcagaacaggtgctataactcctgtagctagacttaagtctgttgcagttggt
ggagttatagtctcaaacgctacattacataatatccatgagataaagcgaaaagatatc
cgtgtgggtgatagagtaatcgtacgcagagctggagatgtaataccagaagtcgttaga
agtctaccaaagtatcgtaaaacgtcagttaagcttatagaaatgccaagcaactgtcca
gtttgtaattcacctgttgaaaacattaatgatcaagcgatatatcgttgtacaggaggt
tggcattgtcaggcacaaaccgctgaacgcctaaaacattttgtttctcgtaaagctatg
gatattgataaaattggagctaaacttattgaacaactagttagagataatttaattaaa
tatccagcagatatctataagcttacctttgagcaattagttaatcttgagagaatgggt
gttaagtcttcacaaaatgttttagattcaattaccaatagtaaaaaccctagcttagcc
aggtttattttttctatcgggattaaagacattggagaagtatcatcagaatcgctagca
aattattttggtagtttagaaaagtttcgtcaagctagttttgatgagctaatatctata
aatgatatcggtgaaattatggctaataatgtaatttctttctggcaagaccctttgaat
ataagaataatggaagatttactaaacgttggtatagaaatatctaatccaagaaagata
gaaaaagttactaacagtaattttgataataaaataatagttatcactggtacatttgaa
gattatagccgtacagacttaacgcagctactgaaatctatgggagctaaagttacttca
agtgtttctaaaaaaacggatatggtcatctgtggtgaaaatgcgggcagcaaatttaca
aaagcacaagagctaggtgtgaatgtggttacagaagataaattaaaagggttgttaagt
tga
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