Anoxybacter fermentans: BBF96_00835
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Entry
BBF96_00835 CDS
T05768
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aft
Anoxybacter fermentans
Pathway
aft03030
DNA replication
aft03410
Base excision repair
aft03420
Nucleotide excision repair
aft03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBF96_00835
03410 Base excision repair
BBF96_00835
03420 Nucleotide excision repair
BBF96_00835
03430 Mismatch repair
BBF96_00835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aft03032
]
BBF96_00835
03400 DNA repair and recombination proteins [BR:
aft03400
]
BBF96_00835
Enzymes [BR:
aft01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBF96_00835
DNA replication proteins [BR:
aft03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBF96_00835
DNA repair and recombination proteins [BR:
aft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBF96_00835
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBF96_00835
MMR (mismatch excision repair)
DNA ligase
BBF96_00835
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBF96_00835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
RNA_ligase
BRCT_2
HHH_3
RNA_lig_T4_1
Zn_ribbon_NUD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AZR74769
UniProt:
A0A3S9T2J2
LinkDB
All DBs
Position
176617..178596
Genome browser
AA seq
659 aa
AA seq
DB search
MAEELRKKIEYHDYRYYVLDDPEIADAEYDQLMRKLQRLEEEYPEIVTPDSPTQRVGGAP
IDEFQKVVHRVPMLSLDNAFNEEELRAFDQRIKRLSGRKDLEYVVELKIDGLTAVLTYEN
GRLVRGATRGDGQVGEDVTHNIRTIKSIPLRLKKPVSIEIRGEVYMDKQGFKEMNKRREE
KGESLFANPRNAAAGTVRQLDPRIAAERPLNYMAYDLIYLGEGGFTTHMEVLEYLEELGF
KVNQRWLCFNIEEVIQITEEWTEKREELPFEIDGLVIKLNDLTLREKLGATSKSPRWAIA
YKFPAQQRTTVVKDILPSVGRTGAITPVAILEPVEVAGSIVSRATLHNEDELKRKDVRIG
DTVVIQKAGDVIPEVVKVVTSKRTGNEKEFKMPTECPVCGAKVVREPGEAVHRCTNNLGC
PAQLREGIVHFVSRNAMNLEGVGPALIDQLLEKELIKDVADLYYLKKEDLVQLERMGEKS
AQNVLAAIERSKERPLDRLIFALGIRHVGSNSARILTQKYKSIDELMNASVDDLLELDEI
GPKIAESIVNFFKEERNRKLIEKLRRGGVKMAMAADEKESQADKSLAGKKFVFTGGLETL
TRNEAKELVLSKGGKVSSSVSKKTDYVVVGKDPGSKYEKAKELGITILTEEEFKKLVQS
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
attgcagaagagttacgaaaaaagattgaatatcacgattatcgttattatgtgttggat
gatccagagattgctgatgctgagtatgatcaattgatgagaaagcttcagcgtttggaa
gaagagtaccctgaaattgttactcccgattcgccaacccagcgagttggcggtgctcca
attgatgaatttcaaaaagtggttcacagggtaccgatgttgagcctggataatgctttt
aatgaggaagaattaagagctttcgatcagaggattaagaggctgagcggtcgtaaagat
ctggagtatgtggtggaattgaagattgatggtttgaccgctgttttaacctatgaaaat
ggtcgtctggtacgcggagcgacccggggagatggtcaagtgggagaagatgtgacccat
aatattcgtactattaaaagcattccgttgagattgaaaaagcctgttagtatcgaaatt
cgtggtgaagtatatatggataaacagggttttaaagaaatgaataagcgtcgggaagag
aagggagagtcattgtttgctaatccccggaatgcggcagcgggtactgttcgccagctt
gatccccggattgctgcagagcggccactaaattacatggcttatgacttgatttatctg
ggtgaaggtggatttactactcatatggaggtattggaatatctggaggaattgggcttt
aaggttaaccagcgctggttatgttttaatattgaagaagtaatccagatcacagaagaa
tggactgaaaagagagaagaattgccctttgagattgatgggttggtgattaagcttaat
gatctgactttgcgggaaaaattgggtgcaacttctaaaagcccccgttgggcgatagca
tataagtttcctgcccagcaaagaactacagtggtaaaagatattctgccatctgtggga
cgaacaggagctataaccccggtggcaattttagagccggttgaagtggcaggttctatc
gttagccgggccacccttcacaatgaagatgaactcaaaagaaaagatgtgcggattgga
gatactgtagtgattcaaaaggctggagatgtaattcctgaagtagtaaaggttgttact
tcaaaacggaccgggaatgagaaagagtttaagatgcctactgaatgtcctgtctgtggg
gctaaagtagtacgtgaacctggggaagcagtacaccgctgtaccaataacctgggatgc
ccggctcagcttcgtgaaggaatagttcattttgtttcccggaatgctatgaacttagaa
ggagttggcccggctcttatcgatcaactgttagaaaaagagttgattaaagatgtggct
gatctctattatttgaagaaagaagacctggttcagcttgagcggatgggagaaaaatct
gctcagaatgtgttggctgctattgaaagaagtaaagagcgcccactggatagactaatc
tttgctttaggaattcgccatgtaggatctaattctgcccggattcttactcagaaatat
aaatccatagatgaattgatgaatgcttcagtagatgatttactggaattagatgagatt
ggacctaaaattgccgaaagtattgtcaacttttttaaagaggagaggaaccggaaactg
attgagaaactgcgccggggcggtgtaaagatggcgatggcggcagatgaaaaagaaagt
caggctgataaatctcttgccggaaagaaatttgtttttaccggtggacttgagactttg
acccggaatgaagcaaaagaactggtattgagtaaaggaggtaaagtctcttccagtgtg
agtaaaaagacggattatgttgttgttggaaaagatccgggttctaagtatgagaaggcg
aaagaactgggtattactattttgacagaagaagaatttaagaaattggtgcaaagctaa
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