Aythya fuligula (tufted duck): 116496229
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Entry
116496229 CDS
T07966
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
116496229 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aful03000
]
116496229 (KDM2B)
04121 Ubiquitin system [BR:
aful04121
]
116496229 (KDM2B)
03036 Chromosome and associated proteins [BR:
aful03036
]
116496229 (KDM2B)
Enzymes [BR:
aful01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
116496229 (KDM2B)
Transcription factors [BR:
aful03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
116496229 (KDM2B)
Ubiquitin system [BR:
aful04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
116496229 (KDM2B)
Chromosome and associated proteins [BR:
aful03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
116496229 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
116496229 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
LRR_At5g56370
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
116496229
NCBI-ProteinID:
XP_032055053
UniProt:
A0A6J3E0I2
LinkDB
All DBs
Position
17:2799849..2874395
Genome browser
AA seq
1083 aa
AA seq
DB search
MSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNLELYEEWVLSGKQSDIFLGDR
VERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVH
AKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQRESMLIDARRKHSLDSYSSDSWLDMD
EESCDAHIQEEKDDSLDKNSKSLMDGSSSPNSTHSEDKEGAGRKQKATVMRYLKRTLSNE
SDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTEFELKGLKALVEKLESLPENKKCVPEG
IEDPQALLEDMKNILKEHADDDQNLAISGVPVVSWPKKTPKNRAVGRPKGKLGAASAVKL
AANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLP
HTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICNEIIHPGCLKVKESDGVVNDELPNCW
ECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKMNRDNKEVTDAAKRKGDCEETP
RRKSEEHSKKTQVDSILRRKSDEVHLRRKRKFEKPQEPSMRKRRRSWKASDDRAAMIKPL
RRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPSTEGAESRDKKKFKMRRKRRLPNKELS
KELSKELNQEIQKTENSLANENHQPIKSEPESENEEPKRALSNSERLHRFNKGLNGTPRE
LRHQLIPSLRSTPRGITRPPPSLSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQR
EVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPV
TLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIAVSALCSSSCPLLRTLDVQWAEGLK
DAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSGKEQFCGSCHIRPDFSSGQIDNRSKLR
NIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEI
NLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQ
KLS
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaaggatgcttcactgattttcatattgattttggtggcacttcagtgtgg
tatcacgttttccgtggggggaagatcttctggctgattccgcctactctgcagaatcta
gaactttatgaagaatgggtgctctcaggaaagcaaagtgatatctttctgggagacagg
gtggaaagatgccaaagaattgagctgaaacaaggctatacgttcttcattccttcaggg
tggatacatgcggtttatactccagtagattctctggtgtttggtggaaatatcctgcat
agctttaatgttcccatgcagcttcgcatctatgaaattgaggacagaacaagggtgcac
gccaaattccgttatcctttctactatgaaatgtgctggtatgttctggagagatacgtg
tcctgtgtgacccagcgctgccacctcagcaaagagtaccagagagaatcaatgttaatt
gatgcaagaagaaaacacagcctagatagctactcatcagattcgtggttagacatggat
gaagaatcttgtgatgcccatatccaagaggaaaaggatgacagcttggataagaactcc
aaatccctgatggatggctcctcctcgcccaacagcacgcactcagaggacaaggagggt
gcagggaggaaacagaaagccacagtaatgaggtacctaaaaagaactttgtctaatgaa
tcagacgacagtgtaaaatccacgacccccacggattatcccaaaacgccaacggggtct
ccagctacagaagtttcaaccaaatggactcacctcacagaatttgaactgaagggttta
aaagccctggtggaaaagcttgaatctctcccagagaacaagaagtgtgttccggaaggc
atcgaggatccgcaggctctcctggaggacatgaagaacattctgaaggaacatgctgat
gatgaccaaaatcttgccatttcgggtgtccctgtggtcagctggcccaagaagacccca
aagaacagggcggtcggacggcccaaagggaagctgggcgctgcctctgcggtgaagctc
gcagctaaccggacgaccgctggagcccgccggaggaggacgcgatgccgcaagtgcgag
gcgtgtctgcggacagagtgcggcgagtgtcacttctgcaaggacatgaagaagttcggg
gggcctggcaggatgaaacagtcctgcattatgaggcagtgtatcgcaccggtgttgcct
catactgctgtatgtctggtgtgtggagaagctgggaaagaggacactgtggaagaggag
gagagcaagtttaatctcatgctaatggaatgctccatttgtaatgaaataatacaccca
ggatgccttaaggtgaaggaatcagatggtgtggttaacgatgagctgccgaactgctgg
gagtgtccaaagtgcaaccatgcagggaaaactggaaaagcgtacaagcaaaagcgcgga
ccaggattcaaatacgcatcaaatctcccaggctcattgctgaaggaacagaaaatgaac
agagacaataaggaagtaacagatgctgcaaaacggaaaggggactgtgaagaaactccc
aggcggaaatctgaggaacattccaaaaagactcaagttgactcaatactgaggagaaag
tcagacgaagtacatctgcggaggaaaaggaaatttgagaaaccccaggaaccctctatg
agaaaacggcggcgatcgtggaaggcttcagatgaccgagctgccatgatcaaacccctg
cggcgcctcaagcaggagccggaggatgagctgccagaagcaccccccaggtccaaggac
agcgaccagtcgcgctccagctcgcccaccgcgggtcccagcacggagggtgccgagtcc
agggacaagaagaagttcaagatgaggcggaaaaggcggcttcccaataaggaactgagc
aaggagctcagcaaggagctcaaccaggagatccaaaaaaccgagaacagccttgccaat
gagaatcaccaacccatcaaatccgaaccggagagtgaaaacgaggagccaaagcgcgct
ttgagcaacagcgagagactccataggttcaacaagggtttgaacgggactccccgggag
ctgaggcaccagctcatccccagcctgcgaagcacccctcggggaataacccggcccccg
ccttcgctctctcctcccaaatgcattcagatggagcggcacgttatccggccgcctccc
atcagcccccctccggactcgctccccctggatgacggggcagcccacgtgatgcagcgg
gaagtctggatggctgtctttagctacctcagtcatagagacttgtgcatctgtatgaga
gtttgcaagacctggaacagatggtgctgtgacaaaagattatggaccaaaatagattta
aaccattgtaaatccatcactccacttatgcttagtggcattattaggagacagcctgta
acccttgatcttagctggacaaatatatctaaaaagcagctgagctggcttatcaacaga
ctgccaggtcttcgagacctgctgttatcagggtgctcatggatagcagtgtcagcactt
tgtagttccagctgtcctttactccgaactctggatgtgcagtgggcagaaggcctgaaa
gacgcccaaatgagagacctcttgtcgccacccacagataaccggccaggctgcaacggg
tgtactttagagagtatggaaacactttcttccagttcagggaaggagcagttctgtggg
tcatgccacattcgcccggatttcagctcaggtcagatcgacaaccggagtaagctacgg
aacatagttgagctgcgcctggccggcctggatattaccgatgcgtctttgcggctgatc
ataaggcacatgcctctgctctccaaactcaatctcagttactgtaatcatgtgacagat
cagtctattaacctgctgaccgcagttggaaccaccacgcgggattcgttaacagaaatt
aatttatcagactgcaataaggttactgaccagtgcctgtcttacttcaaacgttgtgga
aacatctgccagatcgacttgaggtactgcaagcaagtgacaaaagaaggctgtgagcag
ttcatagcagagatgtcagtaagtgttcagtttgggcaagtggaagaaaaacttctgcaa
aaactgagttag
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