Alicyclobacillus mengziensis: JZ786_04930
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Entry
JZ786_04930 CDS
T07322
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
afx
Alicyclobacillus mengziensis
Pathway
afx03030
DNA replication
afx03410
Base excision repair
afx03420
Nucleotide excision repair
afx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JZ786_04930 (ligA)
03410 Base excision repair
JZ786_04930 (ligA)
03420 Nucleotide excision repair
JZ786_04930 (ligA)
03430 Mismatch repair
JZ786_04930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afx03032
]
JZ786_04930 (ligA)
03400 DNA repair and recombination proteins [BR:
afx03400
]
JZ786_04930 (ligA)
Enzymes [BR:
afx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JZ786_04930 (ligA)
DNA replication proteins [BR:
afx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JZ786_04930 (ligA)
DNA repair and recombination proteins [BR:
afx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JZ786_04930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JZ786_04930 (ligA)
MMR (mismatch excision repair)
DNA ligase
JZ786_04930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JZ786_04930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
HHH_8
5_3_exonuc
HHH_3
PTCB-BRCT
Cdd1
BRCT_2
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
QSO48335
UniProt:
A0A9X7Z8E8
LinkDB
All DBs
Position
1068232..1070286
Genome browser
AA seq
684 aa
AA seq
DB search
MDKAQAQQRIETLRKEISYHNRQYYVLDDPKITDAEYDALMRELNKLEEQFPELVTEDSP
TRRVGGAPVEGFTKVVHEVPMLSLGNAYSPDEMREFDRRVRELAGGKVRYACELKIDGLA
VSLRYENGVLIQGATRGDGEIGEDITTNIRTIHTVPLRLTEPISLEVRGEAYMPKRAFER
LNQARELRGEPLFANPRNAAAGSLRQLDPKVAAQRRLSVFVYTLARADTGTPPAHSETLQ
WLGALGLPINPETTVLDDIEDVIDYIMSWQSKRHDLPYATDGMVIKVDDIDIQKRLGFTA
KSPRWAIAYKYAAEQAQTQLRSIMLTVGRTGAVTPTAVFDPVALAGTTVTRASLHNEDYI
TEKDIRIGDIIVVQKAGDIIPEVVRVVTERRTGIEKPFSMPKDCPQCHQPLQRLPGEAAW
RCVNPGCPAQTRERIIHFASRDAMNIEGLGEQWVAQLLQENLIVDVADLYILTKEQLLGL
ERMGERSAQNLIDAIEGSKRNSLERLLFGLGIRLVGEKAAKTIARHFGSLDRLRQASIDE
LTAIPEIGPKMAESMVEFFASEAASEAIRRLVQSGVNTEYLGARGNEDANLDKSTPFAGK
TVVLTGTLSVLDRKEAGDLVEQLGGTVTGSVSARTDILIAGEKAGSKLSKALQLIESGQK
PDLEIMDEATFIQILRNEGITVDG
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggataaagcgcaagcccaacagcgcatcgaaacattacgcaaggagatttcttatcac
aatcgtcagtactacgtactcgatgaccccaaaatcacagacgcggagtatgacgcgttg
atgcgagaactgaacaagcttgaagagcagtttcctgaactcgtcacggaggattccccg
actcgacgggtagggggtgcgcctgtggagggctttacgaaggtcgtccatgaggttccc
atgctctcgctcggtaacgcatacagtcctgatgaaatgcgcgagtttgatcgccgtgtg
cgcgaactcgcaggaggcaaggttcgatacgcttgtgagttgaagattgacgggcttgcc
gtgagcttacgatatgaaaacggcgttctcattcagggagctacccgcggggacggcgaa
attggcgaggacatcacaaccaacattcgtaccattcatacggtaccacttcggctgaca
gaacccatttcccttgaagtccgcggtgaggcgtacatgccaaagcgcgctttcgaacgt
ttgaaccaggctcgcgagctgcgcggggaacccttgtttgcgaacccccgtaatgcagca
gccggatcgctgcgccagttggacccgaaggtcgctgcacaaaggcggttgtccgtgttc
gtatacaccttggcccgtgcagatacaggcacaccgcccgctcattccgagacccttcaa
tggcttggcgccctgggcttgcccatcaatccggaaacgaccgtgctcgatgacattgaa
gatgtgattgactacatcatgtcgtggcagtccaagcgccacgacctcccttatgccact
gacggcatggtcattaaggttgacgatatcgacattcagaagcggcttgggttcacagca
aagagcccgcgttgggccattgcgtacaaatacgcagcagaacaggcacaaacgcagttg
cgatccatcatgttgacagtgggacgcacgggggcagtcactcccaccgccgtgttcgat
ccggtcgcactcgcgggtaccacggtgacgcgtgcgtcgctgcataacgaagattacatt
acagagaaggacattcgcatcggcgatatcatcgtggttcaaaaagctggtgatatcatc
ccggaagtggttcgggtagtgacggagcgccggaccggcatcgaaaaaccgttttcaatg
ccaaaggattgcccccagtgtcaccaaccgttgcagcgtctaccaggggaggcagcgtgg
cggtgtgtgaatccaggctgtcccgcacaaactcgcgagcgcattatccattttgcatcc
cgggatgcgatgaacatcgagggccttggagaacagtgggttgcccaactgctgcaggaa
aacttgattgttgacgtggcagacctctacatcctgaccaaggaacaactacttggatta
gaacggatgggagagcgttcggcacagaacctcatcgatgccattgaaggaagcaagcgc
aattcgctggagcgtctgttgtttgggcttggtattcgtctggtgggcgaaaaggcagcg
aagacgattgcccggcacttcggctctcttgacaggctccggcaggcaagcatcgacgaa
ctcacagcaatccctgagattggaccaaagatggcagagagcatggtggagttttttgcc
agtgaagctgcaagcgaggctatacgacgtttggttcaatcgggtgtgaacacagaatac
ctcggggcacgtggaaatgaagacgcaaatctcgacaagagcactccgtttgcgggcaag
accgttgtcttgacgggaacgttgtctgtgctcgatcgtaaggaggctggtgaccttgtc
gaacaacttgggggaaccgtcaccggcagtgtcagtgctcgaacggacatactgattgcg
ggggaaaaggccggttcgaaactcagcaaggcactgcaattgattgagtcaggtcaaaag
cctgacctcgagattatggacgaagcaacgtttattcaaatcctgcgcaacgagggcata
actgtagacggctaa
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