Acidihalobacter ferrooxydans: BW247_09380
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Entry
BW247_09380 CDS
T09791
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
afy
Acidihalobacter ferrooxydans
Pathway
afy03030
DNA replication
afy03410
Base excision repair
afy03420
Nucleotide excision repair
afy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BW247_09380 (ligA)
03410 Base excision repair
BW247_09380 (ligA)
03420 Nucleotide excision repair
BW247_09380 (ligA)
03430 Mismatch repair
BW247_09380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afy03032
]
BW247_09380 (ligA)
03400 DNA repair and recombination proteins [BR:
afy03400
]
BW247_09380 (ligA)
Enzymes [BR:
afy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BW247_09380 (ligA)
DNA replication proteins [BR:
afy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BW247_09380 (ligA)
DNA repair and recombination proteins [BR:
afy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BW247_09380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BW247_09380 (ligA)
MMR (mismatch excision repair)
DNA ligase
BW247_09380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BW247_09380 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Bep_C_terminal
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
APZ43280
UniProt:
A0A1P8UHH6
LinkDB
All DBs
Position
complement(1992674..1994746)
Genome browser
AA seq
690 aa
AA seq
DB search
MSESGAVAAAAQAAALREQIERHNYAYYVLDEPHIPDAEYDRLLRELQAIEAAHPELVTP
DSPTQRVGAKPAAGFGEVRHAIAMLSLDNCFSDEELRAFDRRVRERLGRADPVVYNAEPK
LDGLAVSLRYESGRLVLGATRGDGHMGEDITQNVRTIPSIPLRLRGADVPRVLEARGEVF
MPRAGFTEMNRKAAERGEKTFVNPRNAAAGSLRQLDPRITAARPLAFFCYGWGELEGTEP
PQSQSGMLTRLRAWGLPVSPEVRIVEGVTGCLEYYRDIAARRAALPYEIDGVVYKVDACA
QQEALGFVSRAPRWAIAHKFPAQEEQTQVLDVEFQVGRTGALTPVARLAPVFVGGVTVSN
ATLHNMDEVERKDVRIGDTVIVRRAGDVIPEIVAVIAERRPPDARSIELPQTCPVCGSEV
VRTEGEAIARCSGGLICSAQRKETIRHFASRRAMDIEGLGDKLIDQLVELGMLDHVDDIY
HLRADQLVDIERMGEKSAANLIAAIERSKDTTLARFLFALGIREVGEATARALASHFGTL
QALEDAARADMHDATDPERKAKDRYARLQAVPDVGPTVAAYIGHFFAEPRNEDVIRKLRE
AGVHWPETQPLKDGPLKGKTYVLTGTLERWTRDEAKAALEALGARVSGSVSGKTTAVVAG
RDAGSKLTKAQSLGVPVLDEAALDALLEHS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtccggtgcggtcgccgccgcggcacaggctgcggcgctgcgcgaacagatc
gaacggcacaactacgcttactacgtccttgatgaaccgcacattccagatgcggaatac
gaccgcctgctacgtgaactgcaagccatcgaggccgcgcatccggagctggttactccc
gactcgccaacccagcgcgtcggcgcgaaaccggctgcgggtttcggcgaagtgcgccac
gccattgcgatgctgtcactggataactgcttcagcgacgaggaactgcgagccttcgac
cgccgcgtgcgcgaacgtctgggccgcgcagacccggtcgtctataacgccgagcccaag
ctcgatgggctggccgtcagcctgcgctacgagagcgggcgtctggtgctgggcgcgaca
cgcggcgacggccatatgggcgaagacatcacgcagaacgtgcgcacgatccccagcatc
ccgctgcgcctgcgcggtgccgacgtgccgcgtgtgctcgaagcgcgtggcgaggtattc
atgcccagggccggcttcacggaaatgaaccgcaaggcagccgagcgcggcgagaagacc
ttcgtcaatccccgcaacgccgccgccggcagtctgcgccagctcgatccgcgcatcaca
gccgcgcgacccttggcttttttctgctatggctggggcgaactcgaaggcaccgagccg
ccgcaaagccagagcgggatgctcacccgactgcgcgcatggggactgccggtcagcccg
gaggttcgaatcgtcgaaggcgtaacgggctgcctcgaatattatcgcgacattgctgcg
cgccgcgccgccttgccctacgaaatcgacggcgtggtctacaaagtcgatgcgtgcgcg
cagcaggaagcactgggtttcgtctcgcgcgcgccgcgctgggccatcgcgcacaagttt
cccgcccaggaagaacagacccaggtgctcgatgtggaattccaggtcgggcgcactggc
gcactgacgccggtcgcgcggttggcgccggtcttcgtcggtggcgtcaccgtgagcaac
gccacgctgcacaacatggacgaggtcgagcgcaaggatgtgcgtatcggcgacaccgtg
atcgtgcgccgcgccggtgacgtgattcccgaaatcgtggccgtgattgccgaacgccgc
ccgccggatgcacggtcgatcgagctgccgcagacgtgtccggtttgtggctccgaagtc
gtacgcactgaaggtgaggccatcgcccgttgctcgggtggtctgatctgctcggcgcag
cgcaaggaaaccatccgtcattttgcttcgcgccgtgcaatggatatcgaaggcctgggc
gacaaactgatcgatcaactcgtcgaactcggcatgctcgatcacgtcgacgacatctat
catctgcgggcggatcaactcgtcgacatcgaacggatgggcgaaaagtccgccgcgaac
ctgatcgcggccatcgaacgcagcaaggacaccacgctggcgcgttttctgttcgcgctc
ggcatccgggaagtcggcgaagcaacggcgcgggcactggcgagccatttcgggaccttg
caggcgctggaggacgcggcgcgtgcggatatgcacgatgcgaccgatcccgaacgcaag
gcgaaggaccggtatgcacgcctacaggccgtgcctgatgtcgggccgacagtggccgcc
tacattggccattttttcgccgagccgcgcaacgaggatgtcatacgcaagctgcgcgag
gcaggcgtgcactggcccgaaacgcaaccgctgaaagacgggccgctcaagggcaagacc
tatgtgctcaccggcacgctggaacgctggacgcgcgacgaggccaaggccgcgctggag
gcgctcggggcccgagtcagtggttcggtatccggaaaaaccaccgccgtcgtcgccggc
cgcgatgccggttccaagttaaccaaggctcagtcgctcggcgtgccggtgctcgacgag
gccgcgctcgacgcgctgctggagcactcatga
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integrated database retrieval system
