Antechinus flavipes (yellow-footed antechinus): 127553453
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Entry
127553453 CDS
T08818
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
127553453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afz03400
]
127553453
Enzymes [BR:
afz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127553453
DNA repair and recombination proteins [BR:
afz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
127553453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
RNA_ligase
BRCT_2
RTT107_BRCT_5
mRNA_cap_enzyme
Phage_term_smal
Ribosomal_S5_C
Motif
Other DBs
NCBI-GeneID:
127553453
NCBI-ProteinID:
XP_051840133
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All DBs
Position
3:complement(164722374..164731878)
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AA seq
911 aa
AA seq
DB search
MATSQASRTVASQVPFADLCSTLERIQKSKSRPDKIKYFKEFLDSWRKFHDAIHKNEKEV
TDSFYPAMRLILPQLERERMAYGIKETMFAKLYIELLNLPKEGKDAQKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCPQQGSLTIQQVNDVLDLIASSKSANRKDLVKKNLLQLITQSSA
LEQKWLIRMIIKDLKLGFSQHTIFSLFHRDAAELHNVTTDLEKVCRELHDPSVGLSDISI
TLFSAFKPMLAAVADIQRIETDMKHQSFYIETKLDGERMQMHKDGDVYKFFSRNGYDYTE
QFGDSSLQGSLTPFIHNAFKTNIQNCILDGEMMAYNPNTQIFMQKGNKFDIKKMVEDSEL
QTCYCVFDVLMVNNKKLGHETLRKRYEIIDSVFTPIKGRLEVVQKTEANTKKEVIDALNE
AIDKREEGIVIKNPLSIYKPDKRGEGWLKIKPEYINKLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAETPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLSKHWKPFHKRTPPNSILC
GTEKPEVYIEPCNSVIVQIKAAEIVSSDMYKTDCTLRFPRIEKIREDKEWYECMTLNELE
NLRGKASGKLATKHLFIAGDDEEPQEKKRKAVKKKKVITIIEHLKAPDLSNINKISNVFE
DVEFCVMSGIDSHSKPSLENCIAELGGCIVQNPGPDTYCIIAGTENVRVKNIISSNKHDV
VKAEWLLECFKAKEHVPWQPCFMIHMCPSTKEHFAREYDCYGDSYFTDTDLLQLKEVFSR
IKNVKENSPKEMSPVITDLEYRYSWDNNPLSMFRQCVIYVDMYAIINDLTTQIQGTRLSI
KALELRFYGAQVISCLEEGVSHVIIGEDHSRVEQFKAFRRTLKKKYKILQDLWVTDSLKE
GNLQEENCYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggccacttcacaagcttcacgaacagtagcatcacaggtgccttttgcagatttatgt
tcaactttagaacgaatacaaaaaagtaaatcccgtccagacaaaatcaaatactttaag
gaatttttagattcgtggcggaaatttcatgatgctattcataaaaatgaaaaagaagtc
acagactctttttatccagccatgagacttattcttccacaactggaacgagaaaggatg
gcttatggaattaaagaaaccatgtttgctaaactttatattgagctgcttaatttacca
aaagaaggaaaagatgctcagaaacttttaaattacagaacaccaactggaactcgtgga
gatgctggagactttgcaatgattgcatactttgtgttgaagccccggtgtccacagcaa
ggaagcttaaccatacagcaagtcaatgatgttttagacttgattgctagcagcaagtca
gccaatagaaaggatctggtaaagaagaaccttcttcagctcataactcagagttctgct
cttgaacaaaagtggcttatccgaatgattataaaggacttaaaactgggttttagccaa
catactatattttctctttttcacagagatgctgctgagttgcataatgttacaactgat
ctagaaaaagtatgcagggaacttcatgatccttcagttggactcagtgatatttcaatt
acattattttctgcttttaaaccaatgctagctgctgtggcagatattcagcgaattgaa
acggacatgaaacatcaaagtttctacatagagacaaaactagatggtgagcgtatgcag
atgcacaaagatggagatgtgtataagttcttttctcgaaatggatatgattacaccgaa
caatttggtgactcttcccttcaaggttctttaacaccatttattcataatgcattcaaa
acgaacatacagaactgtattcttgatggtgagatgatggcctataatcccaacacacaa
atattcatgcagaagggaaataagtttgatattaaaaaaatggtagaagattctgaacta
cagacatgttattgtgtttttgatgtgttaatggtcaataataaaaaattgggacatgag
accttgagaaaaaggtatgaaattattgatagtgtttttacaccaataaaaggtagacta
gaagtggtacaaaaaacagaggctaacactaaaaaagaagtcattgatgctttaaatgaa
gcaatagataaacgtgaggagggaattgtgattaaaaatccactttccatttacaaacca
gataaacgtggtgaaggatggttaaaaattaagccagagtatataaataagttaatggat
gaattggatattttaattgttggtggttattggggtaaaggttctcggggaggaatgatg
tctcattttttgtgtgcagtagcagaaacaccccctcctggtgaaaaaccttctgtattt
catactctttgtcgtgttggttctggatacactatgaaagaactatatgacctcggtttg
aaattatccaaacactggaaaccttttcataaaagaactccaccaaatagcatcttgtgt
ggtacagagaaaccagaagtttatatcgagccttgtaattctgtcattgttcaaattaaa
gcagcagaaattgtcagcagtgatatgtataaaactgattgtacactacgcttccctcgc
attgaaaagataagagaagataaagagtggtatgagtgtatgactctgaatgaattagaa
aaccttagaggaaaagcatctggaaagcttgctactaaacacctttttatagctggtgat
gatgaagaaccacaggaaaaaaaacggaaagctgttaaaaaaaagaaagttattacaatt
attgagcacttaaaagctcctgatctttctaacataaacaaaatttcgaatgtatttgaa
gatgtggaattttgtgttatgagtggaatagatagccattcaaaacccagtctggaaaat
tgcatagcggaattgggtggttgtattgtacagaaccctggcccagacacatattgtata
attgcaggtactgagaatgtgagagtaaaaaatatcatctcttcaaacaagcatgatgtg
gtaaaggcagaatggctcttagagtgttttaaggccaaagagcatgttccatggcagcct
tgctttatgattcacatgtgtccatccacaaaagaacattttgcccgtgaatatgactgc
tatggggacagttattttactgatacagatctgctacaactgaaggaagtattctcaaga
attaaaaacgttaaggagaatagtcctaaagaaatgtctccagtaattacagatttagaa
tatcggtattcttgggataacaaccctctcagtatgttccgacagtgtgttatatatgtg
gatatgtatgctattattaatgacctcacaacacaaatccagggaaccaggctgtccatt
aaagctctggagctgcgattttatggagcacaggttatttcatgtttagaagaaggagtg
tcccatgtaatcattggggaggatcatagtcgtgttgagcaatttaaagcttttcgtagg
actcttaagaaaaagtataaaatcttacaagacctttgggtgaccgattctttgaaagag
ggtaatttgcaggaagaaaattgttacttgatctaa
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