Agathobaculum sp. NTUH-O15-33: RWV98_12200
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Entry
RWV98_12200 CDS
T09495
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agat
Agathobaculum sp. NTUH-O15-33
Pathway
agat03030
DNA replication
agat03410
Base excision repair
agat03420
Nucleotide excision repair
agat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RWV98_12200 (ligA)
03410 Base excision repair
RWV98_12200 (ligA)
03420 Nucleotide excision repair
RWV98_12200 (ligA)
03430 Mismatch repair
RWV98_12200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agat03032
]
RWV98_12200 (ligA)
03400 DNA repair and recombination proteins [BR:
agat03400
]
RWV98_12200 (ligA)
Enzymes [BR:
agat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RWV98_12200 (ligA)
DNA replication proteins [BR:
agat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RWV98_12200 (ligA)
DNA repair and recombination proteins [BR:
agat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RWV98_12200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RWV98_12200 (ligA)
MMR (mismatch excision repair)
DNA ligase
RWV98_12200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RWV98_12200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
HHH
RNA_ligase
zf-NADH-PPase
zinc_ribbon_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WNX83371
LinkDB
All DBs
Position
complement(2516338..2518335)
Genome browser
AA seq
665 aa
AA seq
DB search
MDTLSQITALREKLRYHNEKYYNEDAPEISDYDYDMLQRELRALEAEHPEYADADSPTQR
VGGSASGRFAKVRHAYPLESLQDVFSFEELGEFFARVEGAVGEAEYVVEYKIDGLSVALL
YENGVFTQGLTRGDGQVGEDVTANLKTIKDIPQKLEDAPPRLIVRGEVYMKKSVFDALNA
ELELHEKPLLANPRNAAAGSLRQKSSKVTKERRLSIFCFNIQNADELPLGSHTESLDYLK
KLGFPVSPVYPIFHTADECHSEILRMGETRGALDFDIDGAVIKVNDFLQRETLGSTAKFP
RWAAAYKYPPEIKQTLLKDIVISVGRTGVLTPNAVLEPVRLAGTTVSRATLHNRDFIREL
DVRVGDTVSVRKAGEIIPEIVEVELDKRPADAAPYEMPRFCPACGAPVFEDEEEAAIRCT
GAACPAQLLRNLMHFASRDAMDIDGCGEGNLVKLIDAGLVRSAADLYDLTLEQLLPLGKK
VDVWAGNLLRGIEDSKTRDLSRLLFAFGIRHVGQKAGKVLSNHFGSLDAVLAATVEEMTE
IRDIGQTTAESIAAWRELDQSKTLIDQLRAHGVNFTGEKTAKSDLLAGKTIVATGSLTLY
SRQEINDLIESLGGKASGSVSKKTAYVVAGENAGSKLQKAAELGIPVLTEEEFQNMIREA
AEEEK
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatacgctcagtcagatcaccgcgctgcgtgaaaagctgcggtatcataatgaaaaa
tactataacgaagacgcgcccgaaatttcggattatgattatgacatgctccagcgcgag
ctgcgcgcgctggaagccgaacacccggagtacgccgacgctgattcgccgacccagcgg
gtcggtggttcggcatccggccgtttcgccaaggtgcggcacgcgtatccgctggaaagc
ttgcaggatgtgttttccttcgaggagctgggtgagttttttgcccgtgtcgaaggcgcg
gtgggcgaagccgaatatgtggtcgaatacaagatcgacggactttcggtcgcgctcttg
tatgaaaacggcgtattcacgcagggtcttacgcgcggagacggtcaggtgggcgaggat
gtgaccgccaacctgaaaacgattaaggacattccgcaaaagctggaggacgcgccgccg
cggctgattgttcgcggcgaggtgtatatgaaaaaatcggtgttcgatgcgctgaacgct
gaactggagctgcacgaaaagcctctgctcgccaacccgcgcaacgcggcggcgggctcc
ttgcggcaaaagagcagcaaggtcaccaaggagcgccgcctttcgatcttttgcttcaac
atccaaaacgcggacgagctgccccttggcagccatacggagtcgctcgattatttaaaa
aaactggggtttccggtcagtccggtgtatccgatcttccacacggcggatgagtgccac
agcgagatattgcgcatgggcgagacccgcggcgcgctggattttgatatcgacggcgcg
gtaatcaaggtaaacgactttttgcagcgtgaaacgcttggctccaccgcgaaattcccg
cgctgggcggcggcgtataaatatccgcccgaaatcaagcaaacgcttttgaaggatatc
gtcatttcggtcggccgcacgggcgtgttgacgccgaacgccgttttagagccggtccgc
ctcgcgggcacgaccgtgtcccgcgctacgctgcacaaccgcgattttatccgggagctc
gatgtgcgcgtgggcgatacggtatcggtgcgtaaggcgggggagatcattccggagatc
gtcgaggtggagctggacaagcgcccggcggacgcggcgccctatgaaatgccgcgcttt
tgcccggcttgcggcgcgcctgtgttcgaggacgaggaggaagccgccattcgctgcaca
ggcgcggcctgtccggcgcagcttttgcgcaatttgatgcactttgcctcgcgcgacgcg
atggatatcgacggctgcggcgaaggaaatttggtcaaactgattgacgcgggtcttgtc
cgttcggcggccgacctgtacgacctaacgctcgaacagctgttgccgctcggcaaaaag
gtcgatgtgtgggcgggcaatctgctgcgcggcatagaggacagtaaaacgcgcgatctg
tcgcggctgctctttgcgttcggcattcgccatgtcggccagaaggcgggcaaggtactg
tccaaccacttcggcagtctggacgcggttttggccgccacggtggaggaaatgactgag
attcgcgatatcgggcagaccacggcggaatccatcgccgcgtggcgcgagctcgaccag
tcgaagacgctgatcgatcagctgcgcgcgcacggcgtgaactttaccggcgaaaagacc
gccaaaagcgatctgctcgcgggcaaaacaatcgtcgccaccggcagcctgacgctttac
agcaggcaggagatcaacgatctgatcgagtcgctgggcggtaaagcgtccggctcggtt
tccaaaaagacagcttacgtcgtcgcaggggaaaacgcgggcagcaagctgcaaaaagcg
gctgaactcggtattcccgtgctgacagaagaagaatttcaaaacatgatacgagaagca
gcagaggaggaaaaataa
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integrated database retrieval system
