Anseongella ginsenosidimutans: FRZ59_00430
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Entry
FRZ59_00430 CDS
T06183
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agd
Anseongella ginsenosidimutans
Pathway
agd03030
DNA replication
agd03410
Base excision repair
agd03420
Nucleotide excision repair
agd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRZ59_00430 (ligA)
03410 Base excision repair
FRZ59_00430 (ligA)
03420 Nucleotide excision repair
FRZ59_00430 (ligA)
03430 Mismatch repair
FRZ59_00430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agd03032
]
FRZ59_00430 (ligA)
03400 DNA repair and recombination proteins [BR:
agd03400
]
FRZ59_00430 (ligA)
Enzymes [BR:
agd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FRZ59_00430 (ligA)
DNA replication proteins [BR:
agd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FRZ59_00430 (ligA)
DNA repair and recombination proteins [BR:
agd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FRZ59_00430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRZ59_00430 (ligA)
MMR (mismatch excision repair)
DNA ligase
FRZ59_00430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FRZ59_00430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QEC54110
LinkDB
All DBs
Position
complement(90307..92319)
Genome browser
AA seq
670 aa
AA seq
DB search
MTPPEAQKEIQRLSRELKQHNYNYYALAQPTISDQEFDKMLEELAALEKEFPQFARPDSP
TRKVGGEITKTFRTVRHRYPMLSLGNTYSEQDLLDFDKRIKKLIGENFQYVCELKFDGVA
IGLTYREGKLVQAVTRGDGAKGDDVTTNIKTIKNIPNYIYGSDIPPEFEVRGEIFMHRKA
FARLNAERVEQGEMTFANPRNFAAGTIKMQDSGEVARRPLDCFLYSLLGENLPYKTHFES
LEKLTEWGFHVSEHIRRCNTIREVLDFIHAYEKERFEFSFDIDGIVIKVNSYAQQEELGF
TAKSPRWAIAYKYKAEEVETLLESISYQVGRTGAVTPVANLQPVQLGGTTVKRASLHNAN
EMERLDLRPGDMVLVEKGGEIIPKVIRVNFEKRPQGLATASFPAVCPECETELVRNEGEA
VHYCPNDTGCPPQIVGRMQHFIGRRAMDIQGIGSETIELLYQKGLLKNIADLYELKTKEE
ILLSFDRFGERSVNNLLEGIEKSKEMPFERVLFGLGIRYVGETVARKLAAHFKDIDRLAA
AGFDELISVNEIGDRIAESILDFFNDPEHLSLLERLRAQGLQFKTEEKEIQLQSNRLEGK
TFLISGVFEGYSREELKSMIELNGGKIASGVSAKLHYLVAGENMGPSKREKAEKLNVPII
SEKELLSMLA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgccagaagctcaaaaggaaatacagcggcttagccgggaactgaaacagcat
aattacaactattatgcactcgcccagcccaccatcagcgaccaggagtttgacaaaatg
ctggaagaactggccgccctggaaaaggaattcccgcaatttgcccgtcccgattcgccc
acccggaaagttggcggcgagatcacgaaaaccttccggaccgtccggcaccgctatccc
atgttatcgctggggaatacctattctgaacaggacctgctggattttgacaaaaggata
aagaagctgatcggggagaacttccagtacgtctgcgaactaaaatttgacggggtagcc
attgggctcacttaccgggaaggaaaactggtacaggccgttacccggggagacggcgcc
aagggcgacgatgtgaccactaatataaaaaccataaagaatatcccgaattatatatac
ggcagcgacataccgccggaattcgaggtgcggggcgaaatattcatgcatcgaaaggct
tttgcccggttaaatgcagaaagggtggagcagggagaaatgacctttgccaatccgcgc
aatttcgctgcgggaaccattaagatgcaggattccggggaagtagcccgccggcccctg
gattgttttctctattcgcttctcggtgagaacctgccttataaaacgcattttgaaagc
ctggaaaagttaactgaatggggttttcatgtttcggaacatatccgccgctgcaatact
atccgggaagtccttgactttattcatgcctacgaaaaagagcgttttgaattttccttt
gacattgacggtatcgttattaaggtaaacagttatgcacagcaggaggaacttggtttc
acggccaaatcaccgcgctgggccatagcttataaatacaaggccgaagaggtggagacc
ctcctggaatccatttcttaccaggtaggaagaacaggcgcagtaaccccggtagccaat
cttcagccggtgcagctggggggcaccacagtaaaaagggccagcctccataatgccaat
gaaatggagcggcttgacctccggccgggagatatggtgctggtagaaaagggcggagaa
attattccgaaagtgatccgggtgaatttcgaaaagcgacctcagggcctggccacggcg
agtttccctgccgtttgcccggagtgcgaaaccgagcttgtcagaaatgaaggcgaagcc
gttcattattgccccaacgatacaggctgcccccctcagatagtggggcgaatgcagcac
ttcattggccggcgggcaatggatatccagggaattggcagcgaaaccatcgaactgttg
taccagaaaggcctgctgaagaacatcgccgatctttatgagctgaaaaccaaagaagaa
atattactgtcttttgaccgcttcggggaaagatctgtgaataacctgctggaaggcatt
gaaaagtcaaaggaaatgcccttcgaaagagtccttttcggattgggcatccgctatgta
ggggaaacggtggcccgcaagctggctgcgcatttcaaggatatagaccgcctggccgcc
gccggctttgacgagcttatttctgtcaatgagatcggagaccgtattgccgaaagcatt
ctggactttttcaacgatcccgaacatctctccctgctggaacgcctccgcgctcagggc
ctgcagtttaaaacggaggaaaaggaaatacagcttcaaagtaaccgcctggaaggaaaa
acctttcttatttccggcgtattcgaaggttatagccgggaagaattgaaatccatgatc
gaactcaatggtggaaagatagccagcggcgtttccgcgaagcttcattacctggtagcg
ggggaaaacatggggccctctaaaagggaaaaggcggaaaaactgaatgttcctattatc
tccgaaaaggaactcttaagcatgctggcatga
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