Arachidicoccus ginsenosidivorans: FSB73_15295
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Entry
FSB73_15295 CDS
T06150
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agi
Arachidicoccus ginsenosidivorans
Pathway
agi03030
DNA replication
agi03410
Base excision repair
agi03420
Nucleotide excision repair
agi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FSB73_15295 (ligA)
03410 Base excision repair
FSB73_15295 (ligA)
03420 Nucleotide excision repair
FSB73_15295 (ligA)
03430 Mismatch repair
FSB73_15295 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agi03032
]
FSB73_15295 (ligA)
03400 DNA repair and recombination proteins [BR:
agi03400
]
FSB73_15295 (ligA)
Enzymes [BR:
agi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FSB73_15295 (ligA)
DNA replication proteins [BR:
agi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FSB73_15295 (ligA)
DNA repair and recombination proteins [BR:
agi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FSB73_15295 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FSB73_15295 (ligA)
MMR (mismatch excision repair)
DNA ligase
FSB73_15295 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FSB73_15295 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
PTCB-BRCT
HHH
BRCT_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QEC72841
UniProt:
A0A5B8VP07
LinkDB
All DBs
Position
3808371..3810479
Genome browser
AA seq
702 aa
AA seq
DB search
MYTPDQIKTLQAQSANFLQAATTITDNELDALRRVLRFHEYRYYVADNPLISDEEYDRLY
KKLEAYEAARPDLITSDSPTQRVGANLTGQFETIRHLVPMLSLENSYNAADLVDWDKKVQ
EASKGGHLRYSVEPKFDGASISLLYEDDQLIRAVTRGDGIEGEDVTANIRQIRSVPLSAP
FATYGIQQIEIRGEVMMSKVSFQKFNDKQTEAGLQVLANPRNAASGSLRLKDPAAVRHRG
LDAFLYHISSVVLIEGKKPTQLLDTHSGNLALLWKCGLRSPTKESEIFDTMDAVISHVGD
FEAMRDSLPYEIDGMVIKVDSIALQEALGMTSHHPRWAMAYKFKARQATSTIETVEFQVG
RTGAITPVAKITPVALGGVTISSISLFNEDIIKEKELRIGDQVLVERAGDVIPNIVKALT
ELRKGTETPIVFPENCPVCQAPLHKPEGESVWRCINPYCEAQVVERMIHFVSKDAMDIRS
FGEANVRKFYKLGFLKDIPGIYSLDLERIAQLEGFGKRSLENLVSAIEKSKTQPLYRLIF
GLGIRFVGETTAKVLAKKVAALWELKDFSQEDLMELEDIGPKVAGSIYEFFQAPESIALL
QRLEAEGLNFKGQKTTLQQEGTSPFEGLTFLFTGTLEHLKRNDAEAMVEAKGGKILSGVS
AKLNYLVAGAAAGSKLEKAKKLNTVNIISEQEFITMVNEPRP
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtatacgccagatcagataaaaaccttacaagcccagagtgccaacttcttacaagct
gccacaaccattacagataatgaattagatgcgctcagacgtgtattacgttttcatgag
tacagatattatgtagccgataatccactgatatcggatgaagaatatgaccggttgtat
aaaaagctggaagcctatgaagcggcccgtccagacctgatcacttccgattcccccacg
cagcgtgtcggagcgaatctaaccgggcaatttgagacaatacgccacctggtgcctatg
ctgtcccttgaaaactcatacaatgccgccgatttggtggattgggacaaaaaagtgcag
gaagccagtaaaggtgggcacctgcgttactcagtagaacctaaatttgacggtgccagc
atttctttattgtacgaagacgatcagctgataagagctgtcaccagaggggatgggatt
gaaggcgaagacgtaacggccaatatacgccagatccgatccgttccgctaagtgctcct
tttgcaacctacggcatacagcaaatagaaatcaggggtgaagtcatgatgagtaaagtc
tcttttcaaaaattcaatgataaacagacggaagctggtttgcaagtgctggccaatcca
cgcaatgcggccagcgggagcctgcgcttaaaagatccggctgctgtcaggcatagggga
ctagacgcctttttatatcatatcagcagtgtcgtactgatagaaggtaaaaagcctaca
cagctgctggatacccatagtggtaatttggcattgctttggaagtgtggactcagatct
ccaaccaaagaaagcgaaatctttgacaccatggacgccgtcatctcccatgtaggcgat
tttgaagccatgcgtgacagtctgccctatgaaattgatggtatggtcatcaaagttgac
agcattgcgctgcaagaagcattaggtatgacctctcatcatcccagatgggccatggcc
tataagtttaaagcccgccaggcaacctccaccattgaaacagtggagtttcaggtgggc
cgaactggcgccattacccctgtggcaaagataacacctgtggcgctgggtggtgtgaca
ataagttccatctctttatttaatgaggatattattaaggaaaaggagctgcgcataggg
gatcaggtgctggtagaaagggcaggggatgtgatccctaatattgtcaaagctttgacc
gaactgcgaaagggaacggagacccccattgtattccctgaaaattgtccagtctgtcag
gcgccactccataaaccagagggagaaagcgtctggcgctgtattaatccttactgtgag
gcgcaggtcgtggaaagaatgattcattttgtcagtaaagatgccatggatatacgttca
tttggagaagcaaatgtgcgcaaattttataagcttggttttctaaaagacattcctgga
atctattcgctcgatctggaacgtatcgctcaattggaaggctttgggaaaagatcactg
gaaaacctggtctcggcaatagaaaaaagtaaaacgcagcccttatacagacttattttt
ggattgggtatcagattcgtgggagaaactaccgctaaagtgctggcaaaaaaagtggcg
gcactctgggaattgaaagatttttcccaggaggacttaatggaactggaagatatcggt
cctaaagtggcgggcagcatctatgaatttttccaggcgcccgagagtatagctctttta
caacgactggaagctgagggacttaattttaaagggcagaaaacgacgcttcagcaggaa
ggaacaagtccttttgaaggccttacttttctgtttacaggtacactggaacatctcaaa
agaaatgatgcggaggctatggtcgaggccaaaggtggtaaaatcttaagtggcgtatca
gcaaaactcaattacctggtagcaggtgcagcggctggtagtaaactggaaaaagccaaa
aagctcaatacagtgaatattatatccgaacaagaatttatcaccatggtgaatgaaccg
cgaccttag
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