Actinobacillus genomosp. 2: NYR60_00180
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Entry
NYR60_00180 CDS
T09470
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agk
Actinobacillus genomosp. 2
Pathway
agk03030
DNA replication
agk03410
Base excision repair
agk03420
Nucleotide excision repair
agk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NYR60_00180 (ligA)
03410 Base excision repair
NYR60_00180 (ligA)
03420 Nucleotide excision repair
NYR60_00180 (ligA)
03430 Mismatch repair
NYR60_00180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agk03032
]
NYR60_00180 (ligA)
03400 DNA repair and recombination proteins [BR:
agk03400
]
NYR60_00180 (ligA)
Enzymes [BR:
agk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NYR60_00180 (ligA)
DNA replication proteins [BR:
agk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NYR60_00180 (ligA)
DNA repair and recombination proteins [BR:
agk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NYR60_00180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NYR60_00180 (ligA)
MMR (mismatch excision repair)
DNA ligase
NYR60_00180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NYR60_00180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
DNA_pol_lambd_f
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WGE32076
LinkDB
All DBs
Position
38737..40785
Genome browser
AA seq
682 aa
AA seq
DB search
MPLLSQMQAQADTTFAYLETLRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHP
EWITADSPTQRVGAKPLDGFAQVTHEMPMLSLDNAFSDEDLDGFLRRMESYITENPNSLS
FCCEPKLDGLAVSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLE
VRGEVFMPQKGFEELNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGV
YESDDELPATHFERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTV
LKVNEIGLQEQLGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFV
AGVTVSNATLHNSDEIERLGIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTAC
PVCESAVVRVEGEAVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELV
HTPADLFKLDQTTLMRLDRMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNL
ANHFHNLEAIRAATFEQLQAVQDVGEVVANRIVRFWQEPHNVSVVEDLILQGVHWQDVIQ
VEIEDNPLKGKSVVLTGTLTQLTRDQAKAFLQSFGCKVSGSVSSKTDYLIAGEKAGSKLV
KAQELGVKILTEQEFIALTGEN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcctttattatcacaaatgcaagctcaagcggacacaactttcgcatacctagaaaca
ctacgtcaaaaattacgagaatacgaatatcattatcacgtattggataatccgttagtg
ccggatgcggaatatgaccgcttaatgaatgaattaaaaaatctggaatggcaacatcca
gaatggattaccgcagattcaccgacccaacgagtcggggcaaaaccattggatggtttt
gcacaagtgacgcacgaaatgccaatgttatcgttagataatgcgttttctgatgaagac
ctagatggctttctacgtcgtatggaaagctatattacagaaaatcctaactcactttct
ttctgttgtgagccaaaattagacggtttagccgtcagtattttgtatgtggacggtgta
ttaagccaagcggcaacccgtggcgacggtacaaccggcgaagatattacctcgaatatt
cgtactattcgtaatattccgttaaaactgaatatggacaatccgccggcacgcttagaa
gtgcgtggtgaggtgtttatgccgcaaaaaggcttcgaagaactgaatgaacgtgcgttg
gaaaaaggcgagaaaacttttgccaacccacgtaatgcagcggcaggttcattacgtcag
ttagatccgaaaattacccgtcagcgtccactcgtgttaaatgcttatggaatcggtgtg
tatgaatcggatgatgaattaccggcaacccattttgaacgtttgcaatggctgaaatct
attggtattccggtcaataacgaaattcgcttggcaacagggcgtgagcagttacttgcg
ttttatgcggatattcaagctaaacgtccgacactcggttatgacattgacggcacggtg
ctaaaagtgaatgagattggcttacaagagcagcttggttttatttctcgttcgccacgt
tgggcgatagcttataagtttccggcacaagaagaaatgacggtgctgaatgatgtggaa
tttcaggtgggtagaaccggggcgattacgccggtcgcgaaattagaaccggtattcgtt
gccggtgtgacggtaagtaatgccactttacacaatagcgatgaaattgagcgtttaggc
attgttatcggcgatacggtaattattcgccgtgctggtgatgtgattcctcaaattgtt
ggggtggtgatggatcgccgtccagaaaatgcaaaaaaaattgaatttccgaccgcttgt
ccggtctgtgaatcagcggtagtacgagtcgaaggcgaagcagttgctcgctgtaccggc
ggtttattctgtgcggcacagcgtaaagaagcgttgaagcattttgtttctcgtaaagca
atggatattgacggcgttggcgaaaaattgattgagcaattgatggaacgtgagctggtg
catacgccagcggatctgtttaaactcgatcaaactactttaatgcgtttggatcgaatg
ggcgagaagtcagcacaaaatgcgttaaacagtatcgaaaaagcaaagaataccacttta
gctcgtttcctatttgcattagggatccgtgatgttggcgaagctacggcacaaaactta
gcgaatcatttccataatttagaggcgattcgtgcagcaacttttgagcaattgcaagcg
gtacaggacgttggtgaagtggtcgccaatcgtatcgtacgtttttggcaagaacctcat
aatgtttctgtggtcgaagatctgattttgcaaggcgttcattggcaggacgtgattcag
gttgaaattgaagataatccgttaaaaggtaaaagtgtcgttttaaccggtacgctgact
cagttaacccgagatcaagcaaaagcgttcttacaaagtttcggttgcaaagtgtcaggc
tcggtttcaagtaaaaccgattatttaattgccggtgaaaaagccggctccaaattggta
aaagcacaagaactcggtgtaaaaatattaactgaacaagaatttatcgctctaaccggc
gaaaattaa
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