Akkermansia glycaniphila: PYTT_2131
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Entry
PYTT_2131 CDS
T04551
Name
(GenBank) zinc-finger nad-dependent dna ligase c4-type
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agl
Akkermansia glycaniphila
Pathway
agl03030
DNA replication
agl03410
Base excision repair
agl03420
Nucleotide excision repair
agl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PYTT_2131
03410 Base excision repair
PYTT_2131
03420 Nucleotide excision repair
PYTT_2131
03430 Mismatch repair
PYTT_2131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agl03032
]
PYTT_2131
03400 DNA repair and recombination proteins [BR:
agl03400
]
PYTT_2131
Enzymes [BR:
agl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PYTT_2131
DNA replication proteins [BR:
agl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PYTT_2131
DNA repair and recombination proteins [BR:
agl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PYTT_2131
NER (nucleotide excision repair)
GGR (global genome repair) factors
PYTT_2131
MMR (mismatch excision repair)
DNA ligase
PYTT_2131
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PYTT_2131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_2
BRCT_2
Rubredoxin_2
Motif
Other DBs
NCBI-ProteinID:
SEH96385
UniProt:
A0A1C7PCC6
LinkDB
All DBs
Position
I:complement(2510520..2512823)
Genome browser
AA seq
767 aa
AA seq
DB search
MADDLFDFASRQATPAQRAEELRRILRRNNDLYYAKAAPEISDAEYDKLFRELEELEAQH
PELASPDSPTHRVGNDLTEGFRKIGHPSPMQSIDDIFEKKPGEAAHTDQELIAFYDRLAR
TLEQDAPIVTVEPKIDGVAVTLMYRNGKLEYAATRGDGKQGDDITANVRTIAAIPAELPA
PAPAILEIRGEIFMRSEPFAQLNAQRDAEGLPAFANPRNATAGTIKLLNPEEVAARPLDF
LAHGLGLYEGEPLTDASGYENLLTRLGIPVNRPIIIARSLEETREAVRTVSNLRQTLGYG
TDGAVIKVYDFAQRGELGSTARAPRWAAAFKFLPEQRETVLENIVIQVGRTGVLTPVAEL
APVPLSGTIVSRATLHNQDEIERKDIRIGDTVLVEKAGEIIPAVISVNKTLRPAASEPYS
LYHAVHGRCPSCGEPISRFEGQVAWRCTNITCPAQAATRTIHFCRREALDIESLGGSVAE
TLVARGLIRTPLDLFKLDLETLGSLNLGTDAEPRRFGEKNAAKALQALADARNYPLDRWI
IAFGIPNIGAVTARLVATCHRDLHDLSRSDYLAALLELQTMADEYKALNPKARANKTDDE
QLKQQRELRRTELKETMEQRAAEYTRRGYLILNADAKSSEPILTNPVGNVATQSLVDFFR
SHAGRHAVEELETLGINPSSATYIENKNETVEGPLSGKTFVLTGALSRPRPEYEKLIAAQ
GGKATGSVTKKTDYLVAGEGGGSKRDKAAQLGIPVITEEQLLSMIQP
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgacctcttcgacttcgcctcacgacaagccaccccggcgcagcgcgccgag
gaactgcgccgcatcctccgccgcaacaacgacctctactacgccaaagccgcaccggaa
atatcggatgccgaatacgacaaactcttccgcgaactcgaagaactcgaagcgcagcat
cccgaactcgcctcgccggactcccccacacaccgcgtcggcaacgacctcaccgaaggc
ttccgcaaaatcggccacccgtcgcccatgcaatccatcgacgacatcttcgagaaaaaa
cccggtgaagcagcccacacagatcaggaactcatcgccttctacgacaggctcgcgcgc
acgctcgaacaggatgcccccatcgtcaccgtcgaacccaaaatcgacggcgtcgccgtc
accctcatgtaccgaaacggcaaactggaatatgccgccacccggggagacggcaaacag
ggcgacgacatcaccgccaacgtccgcaccatcgccgccatccccgccgaactcccggcg
cccgctcccgccatcctcgaaatacgcggcgaaatcttcatgcgctccgaacccttcgcg
cagctcaacgcccagcgcgatgccgaagggctccccgccttcgccaacccccggaacgcc
accgccggcaccatcaaactcctcaaccccgaagaagtagccgcccgcccgctcgacttc
ctcgcccacggactcggcctctacgaaggggaaccgctcaccgacgcctccggctacgaa
aacctcctcacccggctcggcatccccgtcaaccgccccatcatcatcgcccgcagcctc
gaagaaacaagggaagcagtccgcaccgtcagcaacctgcgccagacactcggctacggc
acggacggagccgtcatcaaagtatacgacttcgcccagcgcggcgaactcggctccacc
gcccgcgcaccgcgctgggccgccgccttcaaattcctccccgaacagcgcgaaaccgtc
ctcgaaaacatcgtcatccaggtaggccgcaccggagtcctcacccctgtcgccgaactc
gcgcccgtccccctctccggcacaatcgtctcccgcgccaccctccacaaccaggacgaa
atcgaacgcaaggacatccgcatcggagacaccgtcctcgtcgaaaaagccggggaaatc
atccccgccgtcatcagcgtcaacaaaaccctgcgccccgccgcgagcgaaccctacagc
ctctaccacgccgtccacggccgctgcccctcctgcggggaacccatcagccgcttcgaa
ggacaggtcgcatggcgatgcaccaacatcacctgcccggcgcaggccgccacccgcacc
atccacttctgccgccgcgaagccctcgacatcgaaagcctcggaggctccgtcgccgaa
acgctcgtcgcccgcggcctcatccgcacaccgctcgatctcttcaaactcgacctcgaa
accctcggcagcctcaacctcggcaccgatgcagaaccgcgccgcttcggcgaaaaaaac
gcagccaaagccctgcaggccctcgccgacgcacgaaactaccccctcgaccgctggatc
atcgccttcggcatcccgaacatcggagccgtcaccgcccgcctcgtcgccacctgccac
cgggacctgcacgacctctcccgctcggactacctcgccgccctcctcgaactccaaacc
atggcggacgaatacaaagcgctgaacccgaaagcccgcgccaacaaaacggacgacgaa
cagctcaaacagcaacgggaactgcgccgcaccgaactcaaggaaaccatggaacaacgc
gctgcggaatacacccgccgcggctacctcatcctcaacgcagacgccaaaagcagcgaa
cccatcctcaccaaccccgtcggcaacgtcgccacccaaagccttgtggacttcttccgc
tcccatgcgggccgccatgccgtcgaagaactcgaaaccctcggcatcaacccctcctcg
gccacctacatcgaaaacaaaaacgaaaccgtggaaggccccctctccggcaaaacattc
gtcctcacgggagccctcagccgcccccgccccgaatacgaaaaactcatcgccgcgcag
gggggcaaagccaccggaagcgtcaccaaaaaaacggactacctcgtcgccggagaaggc
ggcggctccaaacgggacaaagccgcccagctcggcatccccgtcatcaccgaagaacag
ctcctctccatgatccaaccttaa
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