Actinacidiphila glaucinigra: OIE69_43830
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Entry
OIE69_43830 CDS
T09685
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agla
Actinacidiphila glaucinigra
Pathway
agla03030
DNA replication
agla03410
Base excision repair
agla03420
Nucleotide excision repair
agla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OIE69_43830 (ligA)
03410 Base excision repair
OIE69_43830 (ligA)
03420 Nucleotide excision repair
OIE69_43830 (ligA)
03430 Mismatch repair
OIE69_43830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agla03032
]
OIE69_43830 (ligA)
03400 DNA repair and recombination proteins [BR:
agla03400
]
OIE69_43830 (ligA)
Enzymes [BR:
agla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OIE69_43830 (ligA)
DNA replication proteins [BR:
agla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OIE69_43830 (ligA)
DNA repair and recombination proteins [BR:
agla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OIE69_43830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OIE69_43830 (ligA)
MMR (mismatch excision repair)
DNA ligase
OIE69_43830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OIE69_43830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
PTCB-BRCT
HHH_2
DUF7575
RNA_ligase
DUF8054_C
Motif
Other DBs
NCBI-ProteinID:
WSD65837
LinkDB
All DBs
Position
unnamed1:134119..136140
Genome browser
AA seq
673 aa
AA seq
DB search
MTTVTPAPLADRTAYHSAVDMALGACAAYYGDGTSPLDDASYDLLAGRIRAYELEYPEDV
REDSPTGKVGGGAAPSGDVAHTVPMLSLDNVFSADELFKWEASLARRLGGPVAGGYVVEP
KLDGAAIAARYVDGRLVQLVTRGDGAFGEDISHAIGSIVGLPLELDKSATFEVRGEVLLT
REQFEAANAIRLAHGAKVFSNPRNGTAGTLRAKDRPYVIETTFFAYGVIGLTGDTHEEMM
AAAAATGVQTTAATPAGLRVYASVEEVQCRVQEIAAMRAELPFGIDGVVIKANAVAEQDK
AGFATRHPHWATAYKLPPSVQRSKLLAVEWNVGRTGVIAPRAVLEPVEVDGSVVQYATLH
NPRFIRDSGLMIGDTVGVFKAGDIIPRVEAPVVELRTGAESPIVLPEACPKCGGEIDTSG
ERWECAGGAGGGCGLLAALRYAVGRDQLDIDGLGVTYIEALVDSGAVTDVGDLFTLRLEQ
LVDATRSEKRAETVLGQIEAAKAKPLSRVFCALGVVRTGRTLSREIARYFDTMDAIRAAD
ADALAAVPKLPGANAPKIAAHIAALAPVIDKLVAAGVNMTQPTLPGAAEGGPLTGEVVVI
TGGMHGALAGKNRTEMNDLVTQAGGSSSGSVSRKTTILVAGEGAGSKLAKAQELGTRILT
EQEFAKLVADYLT
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagtaacccctgctccactggctgaccgcaccgcatatcactcagccgtcgac
atggccctgggcgcttgcgccgcctactacggcgacgggacgagtccgctcgacgacgcc
agctacgacctgctggccggccgcattcgcgcctacgagctggagtaccccgaggacgtc
cgggaagactctcccaccggcaaggtgggcggcggtgcggccccgtcgggcgatgtcgcg
cacacggtccccatgctgtccctggacaacgtcttcagcgcggacgagctgttcaagtgg
gaggcctccctggcccgccggcttggcgggcccgtggcaggtggctacgtagtcgagccc
aagctggacggggcggcgatcgccgcccgctacgtcgatgggcgcctggtccagctcgtc
acccggggcgacggcgctttcggtgaggacatctcgcacgcgatcgggtcgattgtcggt
ctgcccttggagctggacaagtcggcgacgttcgaggtccgcggggaggtcttgctcact
cgcgagcagttcgaggcggccaatgcgatccgactggcccacggggcgaaggtcttctcc
aacccgcgcaacggcaccgctggcacgctgcgggcgaaggaccgcccgtacgtgatcgag
acgaccttcttcgcttacggtgtgatcggcctgaccggagacacgcacgaggagatgatg
gcggcggccgccgccacgggggtgcagaccacggccgccacgcctgcaggcctgcgcgtg
tatgcctcggtggaggaggtccagtgccgcgtccaagagattgccgcaatgcgtgcggag
ctcccgttcgggattgacggtgtcgtgatcaaggccaacgccgtcgccgagcaggataag
gccgggttcgccacccgtcatccgcactgggccacggcttacaagctccccccctcggtt
cagcgttcgaagcttctggcggtggagtggaacgtcggccgtactggcgtcatcgcgccg
cgggccgtgctggagccggtcgaggtcgacggcagcgtcgtgcagtatgcgaccttgcac
aacccgaggttcatccgcgacagcggcttgatgatcggcgacacggtgggggtgttcaag
gcgggggacatcatcccgcgcgtggaggcacccgtggtggagctccgcacgggagcggag
tcgccgatcgtgctgcccgaggcatgcccgaagtgcggcggcgagatcgacacctccggc
gagcggtgggagtgcgcaggcggcgcgggtggtggatgcgggctgctcgccgcactgcgc
tatgcagtgggccgcgaccagctcgacattgacggcctcggcgtcacctatatcgaggcc
ctggtcgacagcggcgccgtgaccgacgtcggcgacctgttcaccctccgccttgagcaa
ctggtcgacgcgacgcgcagcgagaagcgggccgaaaccgtcctagggcagatcgaggca
gctaaggctaagccgctgagccgggtcttctgcgccctgggcgtggtgcgcaccggccgc
accctgtcgcgggagatcgcccggtacttcgacaccatggacgcgatccgggccgcggac
gccgacgctctcgccgcggtgccgaagctgcccggcgccaatgccccgaagatcgccgcg
cacatcgccgcgctggccccggtcatcgacaaactggtcgcagcgggcgtgaacatgacc
cagccgacgcttcccggagcggccgagggcggtccgctgaccggcgaggtcgtggtgatc
accggcggcatgcacggggcgctcgccggtaagaaccgcaccgagatgaacgacctcgtc
acccaggctggcggatcttcctcgggcagcgtgtccaggaaaaccaccatcttggtcgcg
ggcgaaggcgccggatcgaagctcgccaaggcgcaggaactgggaaccaggatcctcacc
gagcaggagttcgccaagctcgtcgccgactacctgacctag
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