Alnus glutinosa (common alder): 133852771
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Entry
133852771 CDS
T10577
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133852771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133852771
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133852771
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA
Arf
AAA_23
nSTAND3
ORC-CDC6-like
AAA_25
AAA_30
AAA_7
Stereocilin
Zeta_toxin
TsaE
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
133852771
NCBI-ProteinID:
XP_062145506
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Position
12:22679736..22683480
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AA seq
329 aa
AA seq
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MGGEQNSEPTIETNGLRFTYPGIDGQPPPGSTPLIDDFSLTLQAGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTTLTSSGDLSYLGGEWRREVAFAGFDVPIQMDVS
AEKMIYGVAGIAPERRAELIKVLDINLSWRMHKASDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLRFLKKECEERGATIIYATHIFDGLEDWPSHIVYVAHGKLQLAMRMDK
VKENSKLSLMRTVETWLRKERDEDRKRRKERKACGLPEFDKQIVGSHATGDPARAAVRVI
NNGWAAGRLHSTVAGEDNFLFSSNSVLRS
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgggcggggagcaaaattcagagccaacgatagagaccaacggtctgagattcacgtac
ccgggaatcgacggccagcctcctccgggatccacacctctcatcgatgatttctctctc
accctccaggccggtgatcgctgtctccttgttggatccaatggcgctggtaaaaccaca
attctgaagatattgggagggaagcacatggtggaaccccatatggttcgcgtgcttgga
agatcggcttttcatgacaccacattgacatcttctggtgatctcagctatcttggtggg
gagtggaggcgagaagttgcttttgcagggtttgatgttccaatacaaatggatgtttct
gcagaaaaaatgatatatggtgttgcagggattgctcctgaaagaagagccgagttaatc
aaggtactggacatcaatctatcatggaggatgcacaaggcatctgatggtcagagaaga
cgagtgcagatttgtatgggtctcctcaagccattcaaggttcttcttcttgatgagata
acagttgaccttgatgtactagcgagggctgaccttctgaggtttctaaaaaaggagtgt
gaagagcgaggtgccacaatcatttatgcaacacatatatttgatggtctagaggactgg
ccatctcatattgtttatgtggctcatgggaagttgcaattagcaatgcgtatggataaa
gttaaggaaaacagcaaattgtcattaatgagaacagttgagacttggctgaggaaagaa
cgagatgaggacaggaagagaaggaaagagagaaaggcatgtggtcttccagaattcgac
aaacaaatcgtaggaagccatgcgactggtgatccagcccgtgctgctgttcgtgtaatt
aacaatggctgggccgcagggcggctgcattctaccgttgccggagaagacaactttctg
ttcagctcaaatagtgttctgaggtcgtag
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