KEGG   Alnus glutinosa (common alder): 133854126
Entry
133854126         CDS       T10577                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
aglu  Alnus glutinosa (common alder)
Pathway
aglu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aglu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    133854126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aglu03021]
    133854126
Enzymes [BR:aglu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     133854126
Transcription machinery [BR:aglu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     133854126
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 133854126
NCBI-ProteinID: XP_062146156
LinkDB
Position
13:complement(3290128..3315259)
AA seq 1474 aa
MDYDLHEEQQVPPGVLTGISFNFTTQTDIEKLSVIAIDAVGEVTDPKLGLPNPSSQCSTC
GARDLKYCEGHFGVIKFPFTILHPYYLSEVVKILNRICPGCKSVRQEVKVKGGDPVSSHP
QPKSCKYCIGKSVEWYPTVKFKVSSKELFRNSAIIAEVNEKLPKKFQKKSFRGLPADFWD
FVPKDEQQEESCLKPNRRVLSHAQVHYLLDDIDPKLINKFVLRTDSLFLNCFPVTPNCHR
VTEITHAFSNGQRLIFDERTRAYKKLVDFRGIANELGSRALDCLKISKLSSDVSSNKDLV
FAQQPKGADPSHSSGLRWMKDVVLGKRSDHCFRMVVVGDPRIKLSEIGIPCHVAERLQIS
ERLNRWNFDKLSDCCRLCFIEKGEVYVRRKGILVRVRRIAELQIGDTIYRPLNDGDIVLI
NRPPSIHKHSLIALNVKILPITSVLSINPLCCSPFRGDFDGDCLHGYIPQSIDARVELSE
LVALDKQLINGQSGRNLLSLSHDSLTAAHLVMEDGVLLNLFQMQQLQMFCPHQLMSPAIV
KVPSLNSFVWTGKQLFSMLLPQGFDYAFPSNGVYISNGELLSSEGSFWLRDNNSNLFQSL
VKHCQGKVLDFLYTAQEVLCEWLSMRGLSVSLSDLYLSSNSCSWKNMTDEILCGLQEADQ
TCNFKQLMVDSCRDFLIEGGEENAVVLDVERLCFEKQKSAALSQASVDAFKQVFRDIQNL
VYKYAGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSFRIPHQLSCAAWNNQKA
LGSVQKVDDTPEHTRPYIPYAVVENSFLTGLNPLECFVHSVTSRDSSFSDNADLPGTLNR
RLMFLMRDLYTAYDGTVRNAYGNQLIQFSYDSKKDASTPNSSTHDLFGGSVDAHDGIGGQ
PVGSFSASAISEAAYSALDQPISLLETSPLLNLKNVLESGSRKRNADRTMSVFLSKKLGR
RRHGFEYGALEVKNHLERLMFSDIVSTVMIIFSPQTCSKMHFSPWVCHFHICKESVRRRG
LKVHSIINSLYIRCNTSRTESKLNLSHVQITSKCCSVAETPKENNDTFCINVTLAEISKN
SSLQLDTVQHSVIPFLLGGVVKGYTEIKKVDILWRDGPNLSSRHHSSCGELYLRVSMSGD
SYRTNLWSLLKNDCLQIMDMIDWSRSHPDNVHDFCMAYGIDAGWKYFLKRLESAISDTGK
SILPQHLLLVADSLSATGEFVGLNAKGIAQHREHASVSSPFMQACFSSPGACFIKAAKSG
IVDDLKGNLDALAWGKVAPTGTGGHFDILYSGKEHEVLKPVDVYNLWGSKIISDEQNIQI
KTPVIHKSMSDKCDAQFVYKHDDPVPKGLKKSAISKALLIKLFTANDILKLSHASRIILH
KYPISHSLGEHDKRTVMVALYLHPRGEEKLGSGVQDIKIGCHRKYQNTRCFEVVRMDGTV
EDFSYHKGCLAALEVVDPRRAKSYKSKWLQRSTA
NT seq 4425 nt   +upstreamnt  +downstreamnt
atggactatgacttgcatgaagagcaacaagtgccacctggtgtgctcactggcataagt
tttaattttactactcagacagatatagagaagctatctgttatagcgattgatgcagtt
ggtgaggtcaccgatcctaagttgggactcccaaatccctcttcacaatgctccacatgt
ggtgcccgagatttaaaatactgcgaaggtcattttggggttatcaaatttccattcacc
atactccatccttattatttgtcggaagttgtaaagattttgaacagaatttgccctgga
tgtaaatctgtcaggcaagaagtaaaggtcaagggtggggatccagtatctagccatcct
caacctaagagttgcaaatattgtattggaaagtcagtagagtggtatccaacagtgaaa
tttaaagtttcctctaaggaactctttagaaatagtgcgattatagcagaggtaaatgaa
aagttgccaaagaagtttcagaagaaaagttttaggggtttgcctgctgatttttgggat
tttgttccaaaagatgaacagcaagaagaaagttgtttgaaaccaaacagaagagttcta
tcacatgcccaggtccattatttgttggatgatatcgatccaaagttgatcaacaagttt
gttttgaggacagattcactttttctcaactgttttcctgttacaccgaattgtcatcgt
gtgactgaaattacacatgcattttctaatggacagcgattgatctttgatgaacggacc
agggcctacaagaagctggttgattttagggggatagctaatgagttgggttctcgtgct
ctggactgcctaaaaatttcaaagttaagctcagatgtatcatcaaataaagatttggta
tttgcccagcaaccaaaaggggcagatccttcacactcttctgggttgagatggatgaaa
gatgttgttcttgggaagcgaagtgatcattgtttccgcatggttgttgttggtgatcca
cgtatcaagctcagtgaaattggtataccgtgtcatgttgcagagaggttgcaaatttct
gagcgtttgaacaggtggaactttgataagttgagtgattgctgtagactatgtttcatt
gagaagggagaggtttatgtgcgtagaaaaggtattctggttcgtgtgcgtcgtattgct
gaactccaaattggggacactatatataggcctctgaatgatggagatattgtgttgata
aacagacctccttctatacataaacactcccttatagctctaaatgttaagatcctacca
ataacttcagttctttctataaacccactttgttgttccccatttcgtggggattttgat
ggtgattgccttcatggctatattcctcaatcaattgatgccagagttgaacttagtgag
cttgttgctttagataagcaattaattaatgggcagagtggtaggaacctgctttcactt
agtcatgatagtttaactgctgctcatttggtcatggaggatggggttctcttgaacctt
ttccaaatgcagcagctgcaaatgttttgcccgcatcaacttatgtctccagcaattgtc
aaagttccctcacttaatagttttgtttggactggcaagcaactattcagcatgcttctg
cctcaagggtttgattatgcttttccttcaaatggtgtttacattagtaatggagagctt
ttatcttctgaaggatctttttggctgcgtgacaacaatagcaacctttttcagagtctt
gtcaaacattgccagggtaaggtacttgactttttgtatactgctcaggaagttctctgt
gagtggttgtcaatgaggggcttgagcgtttcactttcagacttatacctctcctctaac
tcatgctcgtggaaaaacatgacggatgaaatcctttgtgggttacaagaagcagaccag
acatgtaattttaaacagttgatggtggattcttgtcgtgattttctcattgaaggtggt
gaagagaatgccgtggttcttgatgtggagcgtttgtgctttgagaagcaaaaatctgct
gcactcagtcaagcttctgttgatgctttcaagcaagtgtttcgggatattcaaaattta
gtctacaagtatgcaggtaaggacaactccttgttgaccatgtttaaggctggaagcaag
ggtaatttgctgaaattggtccagcatagcatgtgtcttggcttgcaacattcactggtt
cgactatcattcagaattcctcaccagctctcatgtgctgcttggaataatcagaaggca
cttggttcagtccagaaggttgatgatactcctgaacatactcggccgtacatcccatat
gctgttgttgagaattcttttctaacgggcttgaatcctttagaatgttttgttcattca
gtcacaagtcgagatagttctttcagtgacaatgcagatctacctgggactttgaaccga
aggcttatgttcttaatgcgtgatttgtacactgcatatgatggaacagtgagaaatgca
tatggtaatcaacttattcagttctcttatgatagtaagaaggatgcatctactccaaac
agcagcactcacgacttgttcggtgggagtgttgatgctcatgatgggattggtgggcag
cctgttggttcattttctgcatctgccatttcagaagccgcatacagtgctttggatcaa
ccaattagcctacttgaaacttctccactgctgaatctgaagaatgttttggagtctggt
tcgagaaagcgtaatgctgacagaactatgtcagtgtttttgtccaagaaacttggaaga
cggagacatgggtttgagtatggagccttagaagttaagaatcatttggagagactaatg
ttttcagatattgtgtctactgtcatgataatcttttccccacagacttgtagcaagatg
catttcagtccttgggtttgccattttcatatatgcaaggaaagtgtgcggagaagagga
ttaaaagtgcattcaatcatcaattccctctacattaggtgtaacacttccagaacagag
tcaaaattgaatctttcccatgtgcaaataacaagcaagtgttgttctgtagctgaaaca
ccgaaggaaaataatgatacattttgcatcaatgtcacattagctgagatctccaagaat
tcttctttacaattggatacagttcaacactcggtcatacctttccttcttggaggtgtt
gttaaaggttacactgagatcaagaaggtggatattttgtggcgtgatgggcctaatcta
tcaagtcgtcatcatagttcttgtggtgaactatacttgagagtttctatgtcaggagac
tcttatagaacaaatctctggagtttgcttaagaatgactgtctacaaataatggatatg
atcgattggtcacgtagtcatccagataatgttcatgatttctgtatggcatatggaatc
gatgctggatggaaatattttctcaaaaggctggaatctgcaatatctgatactgggaag
tctatacttcctcagcatttgctgcttgttgccgatagtctatcagctacaggagagttt
gttggcttgaatgcaaaaggcattgcacagcatagagaacatgcatctgtctcgtcaccc
tttatgcaagcgtgtttctctagcccaggtgcgtgctttattaaagctgctaagtctggt
attgtggatgatcttaagggtaaccttgatgcattggcatggggaaaggttgctcctaca
gggactggtggccactttgatattttatattccgggaaggaacatgaggttttgaagcct
gtagatgtttataacctgtggggcagcaaaattatttctgatgaacagaatatacagatc
aaaacacctgttatacataaaagtatgtctgacaaatgtgatgctcagtttgtctacaag
catgacgatcctgtaccgaaaggacttaaaaagtcggcaatatcaaaagcactcttaata
aagctttttacagcaaatgatattctgaagctgtcccatgcatcgaggattatattacac
aagtatcccatcagtcacagtttaggtgaacatgacaagagaactgtgatggtggcttta
tatcttcatcctcgaggggaagaaaagcttggaagtggagttcaggacataaagattggg
tgccaccgtaagtatcagaatacgcgctgctttgaagtggtacggatggacgggacagtt
gaagatttttcatatcacaagggttgccttgctgctcttgaggtcgttgatccccgaagg
gccaaaagctacaaatcaaaatggctacaacgcagtactgcataa

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