Alnus glutinosa (common alder): 133865824
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Entry
133865824 CDS
T10577
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133865824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133865824
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133865824
Complex C
U5 SnRNP specific factors
133865824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
133865824
NCBI-ProteinID:
XP_062158295
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All DBs
Position
4:34943107..34950293
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AA seq
990 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDGESDREDEDEDLEDRPTEEAEESDGEDAAAASNGWITAST
DIDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFEVGVKDS
SMYVPTQFLVGLMSNPILVRNVALVGHLQHGKTVFMDMLIEQTHHMSTFDAHSEKHLRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQDRLPIVVVINKVDRLITELKLPPKDAYFKLRHTLEVINNN
ISAATSIVGNVPVIDPAAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFASRLWG
DQYYHPDARVFRKKPPPGGGERSFVQFVLEPLYRIYSQVIGEHKKSVEATLVEFGVTLPN
AAYKLNVRPLLRLACSSVFGNASGFTDMLVQHIPSPKAAATRKVDHIYTGPKDSMIYKTM
KNCDPDGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIRTGQTVRVLGEGYSPDDEEDMTVK
EVTKLWVYQARDRTPIAEAPAGSWVLIEGVDASIMKTATLCDEDVARYEDVYIFRPLQFN
TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD
LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGIAEQIENG
EVSIDWSRKRIGEFFEKNHHWDVLASRSIWAFGPDKQGPNILLDDTLSGEVDKNLLNAVK
DSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMA
TPRLMEPMYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGF
ETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGM
SEDVSINKFFDEAMMVELAQQAADLHQQML
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttatatgatgagttcggaaactatattggacctgaaattgagtctgac
ggagagagtgacagagaagatgaagatgaagatcttgaagacaggcccactgaagaggcc
gaggaatcggatggtgaggatgcagccgctgcctcaaatgggtggataacggcttcaact
gacattgatatggataaccagattgtccttgctgaggacaagaagtactacccgactgct
gaagaggtttatggtgaagatgttgaaacgttggttatggatgaagatgagcaacctttg
gagcaaccaataattaaacctgttaggaatatcaagtttgaggttggggtgaaggattct
tccatgtatgttcctacccaatttcttgtgggtctcatgtcaaatcccattctggttcgg
aatgttgctcttgtcggtcaccttcagcatgggaaaactgtcttcatggatatgttgatt
gagcaaacacaccatatgtccacatttgatgcgcacagcgagaagcatttgaggtacaca
gatacgaggattgatgaacaagagagaaggatatcaattaaagcagttccaatgtcgctt
gttcttgaagatagcaattcaaaatcgtacctgtgtaacattatggacacccctgggcat
gttaatttctctgatgaaatgactgctgctctcagacttgccgatggcgctgtattgatt
gtggatgctgctgaaggagtaatggtaaatacagagagggctatacgccatgcaatccaa
gatcgcctacctattgtagttgtaatcaataaggttgacaggctgataacagaacttaaa
ctgcccccaaaggatgcttactttaagctaaggcatacgttggaagtcatcaataacaac
atatctgctgccacttctattgttggcaatgtgccagttatagacccagctgctggaaat
gtttgttttgcaagtgctacagcagggtggtccttcactttgcaatcatttgctaaacta
tatgtcaaactccacgggatcccatttgatgctgataagtttgcatctcggctctgggga
gatcaatattatcatccggatgctcgagtttttaggaagaaaccccctccaggtggaggg
gaaagatcatttgtccagtttgtgcttgaacccctttacagaatatatagccaagtgatt
ggcgaacataaaaagagtgtggaagctactcttgtggaatttggcgtcactcttccaaat
gcagcttacaaattaaacgtcaggcctttgctgaggctggcttgtagctcagtttttggt
aatgcctcaggctttactgatatgctggttcagcatataccttcccccaaagctgctgca
acaaggaaggttgatcatatatatactgggccaaaagactctatgatctacaagaccatg
aagaattgtgatcctgatgggcctttaatggttaatgtgaccaagctgtaccccaagtca
gactgtagtgtctttgatgcttttggtagggtctatagtggcaggattaggacagggcag
actgtacgtgttttaggagaaggctattccccagatgatgaggaggacatgacagtaaaa
gaagtgacaaaattatgggtttatcaagctcgagataggacgccaatagccgaggctcct
gctggttcttgggttctcattgaaggcgtggatgcttccataatgaaaactgccacactt
tgtgatgaggatgtggcacgttatgaggatgtctacatcttccggcctctccagttcaac
actcttccagttgtgaaaacggctactgagcctttaaatccaagtgagttgcctaaaatg
gtggagggtcttaggaagatcagcaagagctatcctctagccattacaaaagttgaggag
tcgggggagcacactattttaggcacaggagagttgtacttggattcaatcatgaaggac
cttagagagctctattctgaagtagaagtcaaggtagctgatcctgttgtttcgttctgt
gaaactgtggtggagtcttcatcaatgaaatgttttgctgaaacgccaaacaaaaagaat
aaaataaccatgattgcagagcctttggagagaggaattgcggagcaaattgagaatggt
gaagtgagcattgattggagtagaaagcgaattggtgaattctttgagaagaatcatcac
tgggatgtgcttgcatcacggtccatatgggcatttggccccgacaagcagggtcctaac
attctattagacgacacactctcaggtgaagttgacaagaatttgctgaatgctgtcaag
gattccattgttcagggatttcaatggggtgctcgagaaggacctctctgtgatgaaccc
ataaggaatgttaagttcaaaatagttgatgcaaggattgcacctgagccactgcatcgg
ggatctggtcaaatcattcctaccgctcgacgtgtggcctattcagctttccttatggca
accccacgccttatggaaccaatgtattatgtagagatacaaaccccaatcgactgtgtc
tctgcaatctacacagtgttatctcgcaggcgtgggcatgttacagctgatgttcctcaa
ccagggaccccagcttatattgttaaggcatttttacctgtcatagaatcatttggtttt
gagacagacttgaggtaccatactcaaggacaagctttttgcctctcggtgtttgatcat
tgggctatcgttcctggggaccctctggacaagagcattgttctgcggccacttgaaccg
gccccaattcagcaccttgctcgtgaatttatggtgaagacaaggcggagaaagggaatg
agtgaagatgtgagcattaacaagttctttgatgaggctatgatggtggagctcgcccag
caggcagctgatcttcatcagcaaatgttgtga
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