Alnus glutinosa (common alder): 133871124
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Entry
133871124 CDS
T10577
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
133871124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133871124
Enzymes [BR:
aglu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
133871124
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
133871124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
133871124
NCBI-ProteinID:
XP_062164484
LinkDB
All DBs
Position
6:19115263..19170579
Genome browser
AA seq
1167 aa
AA seq
DB search
MTETKFSVLCSLFTWMQRSKSSAKKRSKFRKFLDTFCDPGDYFTAIRLLLPSLDRERGTY
GLKESVLATCLIDALGMSRDSHDALRLVNWRKGGAQTGANAGNFSLVAAEVLQRRQGMAS
GGLTIKDVNDLLDRLASAENRAEKTSVLSTLINKTNAQEMKWIIMIILKDLKLGISEKSI
FHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKAVRPQLAMRVPNAPAAWKK
LHGKEVVVERKFDGDRIQIHKNGTEIHFFSRNFLDHSEYGHGMSDIIIQNVLVDRCILDG
EMLVWDTSLNRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERHE
LLRKVVKPLKGRLEILVPNGGLGLNSHYPSGEPCWSRIAHNVDDVERFFKETVENRDEGI
VLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLVIGGYYGSGRRGGEVAQFLVGLAER
PAPNTYPRRFISFCRVGTGLSDEELDAVATKLKPYFRKYEYPRKSPPSFYQVTNNSKERP
DVWVDSPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHECLDVQSFVELV
HSSNGTTQRGTDYGGLQESRPKRMKFSKGERKKVSVVPSHLIQTDISDIKGGSSIFSNMM
FYFINFPPILSLDSLRKLVAENGGTFSMNLNNSVTHCVAADNKGIKYQAAKLHGDIIHYS
WVLDCCSQKKLLHLQPKYFLFLSDSSKKKLQEEIDEFSDSYYQDLDLADIKQLLSNVDRS
EDMKTIDYYKKKYCPQKKWCLFYGFCIYFCPSIPSLKPDWEVLLGLALRRLKLEVSMAGG
KVSNSLALATHLVVLSVPGFDVDFETLLKSFTSLEKHLLWNKGLHVVKSQWLEECLERDQ
RLPEEPYSLKNIGVQDLKTVECEHVKHDPDLEAPSGLDSEEKQNMSPSLDLRKQRTDKTA
LEKPKIVASCEGIGKRKRGRPAGTSMKKGKTTTAQARRTRARIGQRPAKICDNESDESVS
YDEKTQREEIKIREGNHEMVGKGSSEFQGTEVVEDSESSPRGKAVEQEVEKDIIGCEEWH
DKVPKVEMTKMHNNSNDSERPEKLEVMTDPVQAMLLDMIPSLGVKEIGVRERILKDEKPP
PSDSNAEPTKKKKVSYKDVAGELLKDW
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaccaagttcagcgtgctctgcagcctcttcacgtggatgcagcggagcaag
tcgtcggccaagaagcgctccaagttccgcaagttccttgacaccttctgcgatcccggc
gactatttcaccgccatccgcctcctcctccccagcctcgatcgtgagcgcggcacctac
ggcctcaaggagtcggtgctcgccacctgcctcatcgacgccctcggcatgtcccgcgac
tcacacgacgccctccgcctcgtcaattggcgcaaaggcggagcccaaaccggtgccaat
gccggaaacttctccctcgtcgccgccgaggtattgcagcgcaggcaagggatggcttct
ggtggattaacgatcaaggacgtgaacgacttgctcgatcgcttggcttctgctgaaaat
agggcagagaagacatcagttctttctactctgataaacaagacaaatgcacaggaaatg
aagtggattatcatgattattctaaaagatctaaagctgggaattagtgaaaagagcatt
tttcatgaattccatcctgatgctgaagacctgtttaatgtgacctgtgatctaaaattg
gtttgtgaaaagctgagggatcgaagtcaacggcataagcgccaggacattgaagttgga
aaagctgtgcgccctcaactagctatgagagtccctaatgctccagctgcgtggaaaaag
cttcatgggaaggaagtggttgttgaacgcaaatttgatggtgatcgcatccaaattcat
aagaatggaactgagatacacttcttctcaaggaactttcttgatcactctgaatatggg
catgggatgtcggacatcatcatacaaaatgttctggttgataggtgtatacttgatggt
gaaatgttggtctgggatacatctttgaatcgctttgctgagtttggttcaaatcaggaa
atagccaaggcagcaaaggatggactagacagtgatagacagttgtgttatgttgcattt
gatattctttatgttggggataccagtgtaattcaccaaagcttgaaggagcgccatgag
cttttgcggaaagttgtgaagcctttgaagggtcgtttggaaatcttagtacctaatggt
ggtcttggtctaaatagtcactacccttctggggaaccttgttggtcgcgcattgctcat
aatgtggatgatgttgagaggttcttcaaagaaaccgttgagaatagagatgaagggatt
gtgttaaaggaccttggttccaaatgggaacctagtgatcggagtggaaagtggttgaag
ttgaagcctgactatattcgtgctggatctgatctggatgttcttgtcatagggggatac
tatggctctggacgtcgtggtggagaggtagctcaattcctggtgggccttgcagagcgt
ccagccccaaatacataccctaggcgatttatttctttctgcagagtgggtactggactt
tctgatgaagagctggatgctgttgctaccaaattgaagccttattttaggaaatatgaa
tacccaaggaagtcaccaccaagtttttatcaagtaacgaataactcgaaagaaagacca
gatgtttgggttgacagccctgaaaaatcaataattctgtctattaccagtgatattcga
accataagatctgaggtattttctgcaccatatagtctgagatttccacgtattgaccga
gtgagatatgacaagccttggcatgaatgcctggatgtgcaatcttttgtagaactcgta
cattcaagcaatggtactacacaaaggggcacagattatggtggccttcaggaaagtaga
ccaaaacgcatgaaattctcaaagggagagagaaagaaagtctctgttgttccttctcat
ttaattcagactgatatttctgacattaaggggggctcctcaatattttcgaatatgatg
ttttactttattaattttccaccaatcctctctcttgattccttgcgcaaactggttgct
gagaatggagggactttctcgatgaatttgaataactcagttactcattgtgttgcagct
gataacaaggggatcaagtatcaggcagcaaaacttcatggagatattattcattactct
tgggtattggattgttgctcacaaaagaagctcctccatttacagccaaagtacttcctc
ttcctttctgactcatcaaagaagaagttacaagaagaaattgatgaattttctgactca
tattaccaggatcttgatcttgcagacatcaaacagctcttaagtaacgtggacagatct
gaggatatgaaaactatcgactattataagaaaaagtactgtccgcagaagaaatggtgt
ctcttttatggcttctgcatttatttctgcccttcaataccatctttgaaaccagattgg
gaagttttgttgggacttgcattgaggaggttgaagcttgaagtttccatggctggtgga
aaagtcagcaacagtcttgctcttgctacccatttggtagtcttgtcagtaccaggtttt
gacgtagacttcgaaactctattgaaaagtttcacttcattggagaagcatcttttatgg
aacaaggggttgcatgttgtgaaatctcaatggttggaagagtgcttggagagggatcaa
agattgccagaagaaccatatagcttgaagaacattggggtgcaagatttgaaaactgta
gagtgcgaacatgttaaacatgacccggatctagaagccccttctggattggacagtgaa
gaaaaacagaatatgtccccttctcttgatttaaggaaacagagaacagataaaactgct
ttagaaaaacctaaaattgtggcctcatgcgaggggatcgggaaaaggaaaagaggaaga
cctgctggcacaagcatgaagaaaggaaaaacaactacggcccaagctcgaagaacacgg
gcacgtattggacagaggcctgctaaaatatgtgataatgaatcagatgaaagcgtatct
tatgatgagaagacacaaagggaagagatcaaaataagagaaggaaatcatgaaatggta
ggtaagggaagctcagaattccaagggactgaagtagtagaagattctgaatcatcacct
aggggcaaggcagtggagcaagaggttgaaaaagatattattggatgtgaagagtggcat
gataaagttccaaaagttgaaatgactaaaatgcataataatagcaacgacagtgagagg
ccggagaagttggaagttatgactgatccggttcaagccatgttgttagatatgattcca
agccttggagtgaaggaaattggggtgagagagagaattctcaaagatgagaaaccacca
ccctcggattccaatgcagagcctacgaagaaaaagaaagtgagctacaaggatgttgct
ggtgagctgcttaaggattggtaa
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