Actinobacillus genomosp. 1: NYR63_06890
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Entry
NYR63_06890 CDS
T09109
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agp
Actinobacillus genomosp. 1
Pathway
agp03030
DNA replication
agp03410
Base excision repair
agp03420
Nucleotide excision repair
agp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NYR63_06890 (ligA)
03410 Base excision repair
NYR63_06890 (ligA)
03420 Nucleotide excision repair
NYR63_06890 (ligA)
03430 Mismatch repair
NYR63_06890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agp03032
]
NYR63_06890 (ligA)
03400 DNA repair and recombination proteins [BR:
agp03400
]
NYR63_06890 (ligA)
Enzymes [BR:
agp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NYR63_06890 (ligA)
DNA replication proteins [BR:
agp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NYR63_06890 (ligA)
DNA repair and recombination proteins [BR:
agp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NYR63_06890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NYR63_06890 (ligA)
MMR (mismatch excision repair)
DNA ligase
NYR63_06890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NYR63_06890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
DNA_pol_lambd_f
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WGE90564
LinkDB
All DBs
Position
complement(1502431..1504482)
Genome browser
AA seq
683 aa
AA seq
DB search
MPLLSQMQEDQADTTFAQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQH
PEWITVDSPTQRVGAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPHTL
AFCCEPKLDGLAVSILYVDGVLNQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARL
EVRGEVFMPQKGFEELNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIG
VYESDDELPATHFERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGT
VLKVNDIGLQEQIGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVF
VAGVTVSNATLHNGDEIERLGIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTA
CPVCESAVVRVEGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMDREL
VHTPADLFKLDHTTLMRLERMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQN
LANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQEPHNVAVVEDLISQGVHWQDVI
QVEIADNPLKGKSVVLTGTLTQLTRDQAKASLQSFGCKVSGSVSSKTDYLIAGEKAGSKL
AKAQELGVKILTEQEFIALTGEN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgcctttattatcacaaatgcaagaagaccaagcggacacgactttcgcacaattagaa
gctttacgtcaaaaattacgagaatatgaataccattatcacgtattggataatccgtta
gtgccggatgcggaatatgaccgcttaatgaatgaattaaaaaatctggaatggcaacat
ccggaatggattaccgtcgattctccgacccaacgtgtcggggcgaaaccgctggacggc
tttgcacaagtgacgcacgaaattccgatgttatcgttggataatgccttttccgatgaa
gaattagacggttttttacgccgtatggaaagttatattactgaagatccgcatacgctt
gctttttgttgcgaacctaaattagacggtttagcggtcagtattttgtatgtggatgga
gtgttaaaccaagcggcaacacgtggtgacggtacaaccggtgaggatattacctcaaat
attcgtaccattcgtaatatcccgttaaaactgaatatggataacccgccggcacgttta
gaagtgcgtggcgaggtgtttatgccgcaaaaaggctttgaagaactgaatgaacgtgcg
ctggaaaaaggcgagaaaacctttgctaatccgcgtaatgcggcggcaggttcattacgt
cagttagatccgaaaattacacgtcagcgtccgctcgtgttaaatgcctatggaatcggt
gtttatgaatcggatgatgaattacctgcaacccattttgaacgtttgcaatggctgaaa
tctatcggtattccggtcaataatgaaattcgcttggcaacagggcgtgagcagttactt
gcgttttatgcggatattcaagccaagcgtccgacactcggttatgacattgacggcacg
gtgctaaaagtgaatgacataggcttacaagagcagatcggctttatttctcgttcgccg
cgttgggcgatagcttataagtttccagcacaagaagaaatgacggtgctgaatgatgtg
gaatttcaggtgggcagaaccggggcaattaccccagtcgcaaaattagaaccggtattc
gttgccggtgtgacggtgagtaatgccactttacataacggtgatgaaattgagcgttta
ggcattgtcatcggcgatacggtgattattcgccgtgccggtgatgtgattccgcaaatt
gttggggtggtgatggatcgccgtccggaaaatgcaaaaaaaatcgaatttccgaccgct
tgtccggtctgtgaatcggcggtagtacgtgtggaaggcgaagcggttgctcgctgtacc
ggcggtttattctgtggtgcacagcgtaaagaagcgttgaagcatttcgtttcgcgtaaa
gcgatggatattgacggtgtcggcgagaaattgatcgaacaattaatggatcgtgagttg
gtgcatacaccggcggatctgtttaaactcgatcataccactttaatgcgtttggaacga
atgggtgaaaaatcggcacaaaatgcgttaaatagcatcgaaaaagcaaaaaataccact
ttggcacgtttcttatttgcattaggcattcgtgatgtcggcgaagccaccgcacaaaac
ttagcgaatcacttccataatttagatgcgatccgtgcggcaactttcgagcaattgcaa
gaagtacaagatgtcggcgaagtggtggcaaatcgtattgtacgtttctggcaagaacct
cacaatgttgcggttgtcgaagatttgatttcacaaggcgtacattggcaagatgtgatt
caggttgaaattgcggataacccgttaaaaggaaaaagtgtggttttaaccggtacactt
actcaattaacccgagatcaagcaaaagcatcgctacagagtttcggttgtaaagtatct
ggctcggtttcaagcaaaaccgattatttgattgccggtgaaaaagccggttcaaaattg
gcaaaagcgcaagaacttggcgttaagatattgaccgaacaagaatttatcgctttaacc
ggcgaaaattaa
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