Agrobacterium tumefaciens H13-3: AGROH133_07396
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Entry
AGROH133_07396 CDS
T01432
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agr
Agrobacterium tumefaciens H13-3
Pathway
agr03030
DNA replication
agr03410
Base excision repair
agr03420
Nucleotide excision repair
agr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AGROH133_07396 (ligA)
03410 Base excision repair
AGROH133_07396 (ligA)
03420 Nucleotide excision repair
AGROH133_07396 (ligA)
03430 Mismatch repair
AGROH133_07396 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agr03032
]
AGROH133_07396 (ligA)
03400 DNA repair and recombination proteins [BR:
agr03400
]
AGROH133_07396 (ligA)
Enzymes [BR:
agr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AGROH133_07396 (ligA)
DNA replication proteins [BR:
agr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AGROH133_07396 (ligA)
DNA repair and recombination proteins [BR:
agr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AGROH133_07396 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AGROH133_07396 (ligA)
MMR (mismatch excision repair)
DNA ligase
AGROH133_07396 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AGROH133_07396 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_ligase
RUBY_RBDX
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
ADY64995
LinkDB
All DBs
Position
circular:complement(1997462..1999636)
Genome browser
AA seq
724 aa
AA seq
DB search
MSKDQIPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAA
FPALVRADSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEGDLRDFVSSVYRFLGHLPDD
SIAFTAEPKIDGLSMSIRYENGKLKTAATRGDGTTGENVTANIKTIKEIPNQLPADVPDV
VEVRGEVYMAKSDFMALNAQMEADGKQTYVNPRNTASGSLRQFDANVTAKRKLRFFAYAL
GEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAEQLLEHYNEIGVARPDLDYD
IDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARL
TPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVL
LEKRPAEAVKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVS
RNAFDIEGLGSKQIDFFFESEDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGKVSVK
KLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEEAMKAAADPASDAWA
ELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELRPKEAEKPSTEGSPVAGKTVVFTG
SLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDEDEWLA
LIGG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagaccagattcccgtcgaaaacctgaccgagcttgaggcctcttccgagctg
gcatttctggcagccgagcttgcccgccacgatgcgctttatcatggcaaggacgcgccg
gaaatttcggacgcggactacgatgcgctgaagcggcgcaacgatgccatagaggcggct
ttcccggcgctggtgcgggccgacagcccgtcgaagaaagtcggcttcacgccgcttccc
accttcgcgcccatcgtgcatgcgcggccgatgctttcactcgacaatacgttttctgaa
ggtgatctgcgcgatttcgtcagttcggtctatcgcttcctcgggcacctgccggatgat
tcgattgcctttaccgccgagccgaagatcgacggactttccatgtccatccgctacgag
aacggcaagcttaagacggcggcaacacgtggcgacggcacgacgggcgagaacgtcacc
gccaatatcaagaccatcaaggaaattccgaaccagctgcctgccgatgtacccgatgtg
gtggaggtgcgcggcgaggtctatatggccaagagcgacttcatggcgctcaatgcccag
atggaggccgatggcaagcagacctacgtgaacccgcgcaacacggcctccggttcgctg
cgccagtttgacgccaatgtgacggcgaaacgcaagctgcggttctttgcctatgcgctt
ggcgaggtttccaatggcggccagccgacgcggattgccgacacgcaatatggtatcgtc
gagaaattccgggaatggggtttccctgtcaatccgctgatgaagcgattcacctctgcc
gaacaattgcttgaacattataatgaaatcggcgtcgcgcgacccgatctcgattacgat
atcgacggcgtggtctacaaggtcgaccggctggaccttcaggaacggcttggtttccgt
tcgcgcagcccgcgctgggccaccgctcacaagttcccggccgagcaggccttcaccacg
gtcgagaacattgaaatccaggtagggcgcaccggcgcgctgacaccggttgcgcgtctc
accccgattaccgtcggcggcgtcgtcgtcaccaatgcgacgctacacaatgccgattac
atcgagggtatcggcaatagcggcgagcgcattcggcccgaggatcatgatatccgcatt
ggcgatactgtcatcgtgcagcgtgcaggcgatgtcattccgcaggtgctggatgtgctt
ctggagaagcgcccggctgaggcggtgaaatatgcgtttccggagaaatgtcctgtgtgc
ggcagccatgcggtgcgggagcgcaacgaaaaaaccggtaagctcgattcggtcacgcgc
tgcaccggcggtttcgtctgccgggcgcaggcggtcgagcatctgaaacatttcgtttcg
cgcaatgccttcgatatcgagggattgggtagcaagcagatcgatttcttcttcgaaagc
gaggatccggccctctccatcaagaccgcgcctgatattttcacgctgaaggcgcggcag
gaggcatcgcatcttaccaaactcgaaaacatagatggtttcggcaaggtcagcgtcaag
aaactgttcgatgccatcgatgcccgccgcgagatcgatctgcatcggcttatcttcgct
ctcggcattcgtcatgtcggtgaaaccacggcgaagcttctggcgcgttcctatggcacc
tatgagcatttcgaggaagccatgaaggcggcagccgacccggcgagcgatgcctgggcc
gaactcaacagtatcgatggcatcggcgaggtcgtggcgcgcgccatcatcgaattctac
aaggaaccgcgcaatctcgatgtcatcgaccggctgatacgggagctgcggccgaaggag
gccgagaagccctcgaccgaaggcagcccggtagcgggcaagacggtggtctttaccggg
tctctggaaaaattcacgcgcgatgaggccaaggcccgcgccgaaagtctgggcgccaag
gtggccggctccgtatcgaagaagacggatattctggtggccgggccgggggcaggttcc
aagcttgccaaggcggcggagctgggcgttcagaccatggacgaggacgagtggctggcg
ctgatcggtggctga
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