Actinomadura graeca: AGRA3207_006192
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Entry
AGRA3207_006192 CDS
T07938
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agra
Actinomadura graeca
Pathway
agra03030
DNA replication
agra03410
Base excision repair
agra03420
Nucleotide excision repair
agra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AGRA3207_006192 (ligA)
03410 Base excision repair
AGRA3207_006192 (ligA)
03420 Nucleotide excision repair
AGRA3207_006192 (ligA)
03430 Mismatch repair
AGRA3207_006192 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agra03032
]
AGRA3207_006192 (ligA)
03400 DNA repair and recombination proteins [BR:
agra03400
]
AGRA3207_006192 (ligA)
Enzymes [BR:
agra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AGRA3207_006192 (ligA)
DNA replication proteins [BR:
agra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AGRA3207_006192 (ligA)
DNA repair and recombination proteins [BR:
agra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AGRA3207_006192 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AGRA3207_006192 (ligA)
MMR (mismatch excision repair)
DNA ligase
AGRA3207_006192 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AGRA3207_006192 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
DUF6782
DUF7741
Motif
Other DBs
NCBI-ProteinID:
QXJ24796
UniProt:
A0ABX8R131
LinkDB
All DBs
Position
7007148..7009316
Genome browser
AA seq
722 aa
AA seq
DB search
MTTSDGVPGEARERHHELSERIDDGNYRYYVLDQPTLTDAEYDAMMRELKELEERHPELV
TPDSPTQRVGAPITTDFATVDHLERMQSLDNAMTDEALLAWDERVVKEVGEVAGYLCELK
IDGLAIAVTYERGRLVRGVTRGDGRTGEDVTHNIRTIADIPDRLAGEGWPDVLEVRGEVF
LPVEGFEQVNAAQVEAGKEPFANPRNAAAGSLRQKDPRVTAHRPLGMLVHGFGAWRGGTQ
PESQSGAYELMRGWGLPVSDRYEVLGGLDAVREYIGRYGDHRHDTAYEIDGVVVKVDQFA
LQRRLGSTSRAPRWAIAWKYPPEEVNTRLLDIKVGVGRTGRITPYGVMEPTKVAGSTVER
ATLHNAGEVRRKGVLIGDTVVLRKAGDVIPEIVAPVAALRDGSEREFEMPANCPECGTAL
AYEKEGDADIRCPNARLCPGQLRERLYFVASRNALDIEALGYVGATALTQPLEPAEPPVR
NEGDLFHLTVDQLLPIRSLVLDARTGTPKNDPKTGEPKVVSFFANKEGEPKKTVEILFEE
LEKAKRQPLWRVLVALSIRHVGPAASQNLARELRSMDAIAAATEEELSAVEDVGPTIAAS
IRAWFEVDWHREIVEKWRAAGVRMQDEGAAGPRPLKDLTVVITGSLEGFSRDSAKEAVQN
LGGKVSGSVSKKTDFVVVGDNPGSKYDKAVKLGVPVLAEEGFRALLADGPDAAKNMTLRA
EE
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgagtgatggggttcccggcgaggcgcgggagcggcaccatgagctgagcgag
cggatcgacgacggcaactaccgctactacgtcctcgaccagccgacgctcaccgacgcc
gagtacgacgcgatgatgcgcgagctcaaggagctggaggagcggcatccggagctcgtc
acccccgactccccgacgcagcgggtcggcgcgccgatcaccaccgacttcgcgacggtc
gatcatctggagcggatgcagagccttgacaacgcgatgaccgacgaggcgctgctggcg
tgggacgagcgggtggtcaaggaggtcggcgaggtcgccggctacctgtgcgagctgaag
atcgacggcctggccatcgccgtgacgtacgagcggggccgcctggtgcgcggggtgacc
cgcggcgacgggcgcaccggcgaggacgtcacgcacaacatccgcaccatcgccgacatc
ccggaccggctggccggtgagggctggccggacgtcctggaggtgcgcggcgaggtcttc
ctcccggtggaggggttcgagcaggtcaacgccgcgcaggtcgaggccggcaaggagccg
ttcgccaacccccgcaacgcggcggcggggtcgctgcggcagaaggacccgcgggtcacg
gcgcaccgcccgctcgggatgctcgtgcacgggttcggcgcgtggcggggtgggacgcag
ccggagagccagtccggggcgtacgagctgatgcgcggctgggggctcccggtcagcgac
aggtacgaggtcctcggcgggctggacgccgtccgggagtacatcgggcggtacggcgac
caccggcacgacacggcgtacgagatcgacggcgtggtcgtcaaggtcgaccagttcgcc
ctccagcgccggctcgggtcgacgagccgcgcgccgcgctgggccatcgcgtggaagtac
ccgccggaggaggtcaacaccaggctcctcgatatcaaggtcggcgtcgggcggacgggg
cgcatcaccccctacggcgtgatggagccgacgaaggtggcgggctccacggtcgagcgg
gccaccctgcacaacgcgggcgaggtgaggcgcaagggcgtgctgatcggcgacaccgtc
gtcctgcgcaaggccggcgacgtgatccccgagatcgtcgcgccggtcgccgcgctgcgg
gacggctcggaacgcgagttcgagatgcccgcgaactgccccgagtgcggcacggcgctg
gcgtacgagaaggagggcgacgccgacatccgctgcccgaacgcgcggctctgcccgggc
cagctccgcgagcggctgtacttcgtcgcgagccgcaacgcgctggacatcgaggcgctc
ggctacgtcggggcgaccgccctcacccagccgctggagcccgccgagcccccggtcagg
aacgagggcgacctgttccatctgaccgtcgaccagctcctgccgatcaggagcctcgtc
ctggacgccaggacgggcacgcccaagaacgacccgaagacgggcgagcccaaggtcgtg
tcgttcttcgcgaacaaggagggcgagccgaagaagacggtcgagatcctcttcgaggag
ctggagaaggccaagcggcagccgctgtggcgggtgctggtggcgctgtcgatccggcac
gtggggcccgccgcgtcccagaacctcgcccgcgagctgcgttccatggacgccatcgcg
gccgccaccgaggaggagctgtcggcggtcgaggacgtcggccccacgatcgcggcctcg
atcagggcgtggttcgaggtcgactggcaccgcgagatcgtcgagaagtggcgggcggcc
ggggtccgcatgcaggacgagggcgcggcggggccgcggccgctgaaggacctcaccgtg
gtgatcaccgggtcgctggagggcttcagccgcgactcggcgaaggaggcggtgcaaaac
ctcggcgggaaggtgtccgggtcggtgtccaagaaaacggacttcgtcgtggtgggggac
aaccccggatccaagtacgacaaagccgtcaagctgggcgtaccggttctggcggaggaa
gggttccgcgcactgctggccgacgggccagatgcggccaaaaacatgactttgcgcgcg
gaggagtga
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