Agrobacterium sp. CGMCC 11546: GSF67_09905
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Entry
GSF67_09905 CDS
T10431
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agrc Agrobacterium sp. CGMCC 11546
Pathway
agrc03030
DNA replication
agrc03410
Base excision repair
agrc03420
Nucleotide excision repair
agrc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GSF67_09905 (ligA)
03410 Base excision repair
GSF67_09905 (ligA)
03420 Nucleotide excision repair
GSF67_09905 (ligA)
03430 Mismatch repair
GSF67_09905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agrc03032
]
GSF67_09905 (ligA)
03400 DNA repair and recombination proteins [BR:
agrc03400
]
GSF67_09905 (ligA)
Enzymes [BR:
agrc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GSF67_09905 (ligA)
DNA replication proteins [BR:
agrc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GSF67_09905 (ligA)
DNA repair and recombination proteins [BR:
agrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GSF67_09905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GSF67_09905 (ligA)
MMR (mismatch excision repair)
DNA ligase
GSF67_09905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GSF67_09905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_ligase
RUBY_RBDX
DZR_2
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QKW97379
LinkDB
All DBs
Position
1:complement(1886614..1888788)
Genome browser
AA seq
724 aa
AA seq
DB search
MSKDQIPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAA
FPALVRADSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGHLPDD
SIAFTAEPKIDGLSMSIRYENRRLKTAATRGDGTTGENVTANIRTIKEIPNELPSDAPDV
VEVRGEVYMAKSDFLALNAQMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYAL
GEVSNGGQPARIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPDLDYD
IDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARL
TPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVL
LEKRAVGAAKYVFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVS
RNAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGKVSVK
KLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEEAMKAAADPASDAWA
ELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELQPKEAEKPSTEGSPVAGKTVVFTG
SLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDEDEWLA
LIGG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagaccagattcccgtcgaaaacctgaccgagcttgaagcctcttcggagctg
gcgtttctggcagccgagcttgcccgtcatgatgcgctttaccacggcaaggacgcgccg
gagatttccgatgccgactatgatgcgctgaagcggcgcaatgatgccatcgaagcggcg
ttcccggcattggtgcgggctgatagcccgtcgaaaaaagtcggcttcacaccgctgccg
accttcgcgcccatcgtgcatgcccgtccgatgctgtcgctcgacaatacgttttcggaa
gaggacctgcgcgatttcgtcagttcggtctatcgcttcctcgggcacctgcctgatgat
tccatcgcttttaccgccgagccgaagatcgacgggctttccatgtcgatccgctacgag
aaccgcaggctgaagacggcggcgacacgcggtgatggcacgacgggcgaaaacgtcacc
gccaatatcaggaccatcaaggaaattccgaatgaactgccttcggacgcgcccgacgtg
gtggaggtgcgcggcgaagtctatatggccaagagcgacttcctggcgctgaacgcccag
atggaggccgatggcaagcagacctatgtgaacccgcgcaacacggcatccggttctctg
cgccagctcgatgcgaatgtgacggcgaaacgcaagctgcggttctttgcctacgcgctg
ggtgaagtctccaatggcggccagccggcgcggattgccgatacgcaatatggcatcgtc
gagaagttccgggagtggggattcccggtcaatccgctgatgaagcgattcacctccgcg
cagcaattgcttgagcattataatgaaatcggcgtcgcccgacccgatctcgattacgat
attgacggcgtcgtctataaggtcgaccggctcgatcttcaggaacgtctgggtttccgc
tcccgcagccctcgttgggccaccgcacacaagtttccggccgagcaggcttttaccacc
gtcgagaatatcgaaattcaggtgggacgcaccggcgctttgacgccggtggcgcgcctc
acgccgatcaccgttggcggtgtggtcgtcaccaatgcgacgttgcacaatgccgattat
atcgaaggcatcggcaatagcggcgagcgtatccgcccggaggatcacgatatccgcatc
ggcgacacggtcatcgtgcagcgcgccggcgacgtcattccgcaggtgctggatgtgctt
ctggagaagcgcgcggttggggcggcgaaatatgtctttccggagaaatgtccggtctgc
ggcagccatgcggtgcgggaacgcaacgaaaagactggcaagctcgattcggtcacgcgc
tgcaccggcggttttgtctgccgggcacaggcggtggagcatctaaaacatttcgtctcg
cgtaacgccttcgacattgaagggctgggcaccaagcagatcgatttcttcttcgaaagc
gacgatccggcactttcgatcaagaccgcgcctgacatttttacgctgaaggcgcggcag
gaggcatcccatctgaccaagctcgagaatatcgacggcttcggcaaggttagcgtgaag
aagctgttcgacgcgatcgatgcccgccgcgagatcgatctgcatcggctgatcttcgcg
ctcggcattcgtcatgtcggcgagaccacggcgaagcttctggcgcggtcctatggcact
tatgagcatttcgaggaggccatgaaggcggcggccgatccggcgagcgatgcctgggcg
gaactcaacagtatcgacggcatcggcgaggtggtggcccgtgccatcatcgagttttac
aaggagccgcgcaatctcgatgttatcgaccggctgatacgggagcttcagccgaaggag
gccgagaagccttcaactgagggcagcccggtggcaggcaagactgtcgtctttaccggc
tcgctggaaaaattcacccgcgatgaggcgaaagcccgggccgaaagcctgggcgcaaag
gttgccggttcagtttcgaaaaagacggatattctggtcgcagggccgggggcgggctcc
aagcttgccaaagcggcagagctgggtgtgcagaccatggacgaggatgagtggctggcg
ttgatcggcggctga
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