KEGG   Apium graveolens (celery): 141666932
Entry
141666932         CDS       T11340                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    141666932
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:agrv03021]
    141666932
Enzymes [BR:agrv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     141666932
Transcription machinery [BR:agrv03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     141666932
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 141666932
NCBI-ProteinID: XP_074329286
LinkDB
Position
6:complement(117769542..117785315)
AA seq 1450 aa
MDYDYAEQAVASGFLSSITFGIVTEEDVEKMSVKEIEVPNDVIHPTLGIPSPMSSQCLTC
DAKNMKTCEGHFGCIKFPHTILHPYFISDVAKILNRICVKCKSERTRTKSASSPSTNKKH
GRSTSTSNKHGRCKYCDGHLKDLYPRPIFKVSSPEIFGSTVIYAKISERLRTPSIASDYW
DFLQNDPQEEGSALKPYERSLSHAQVQELLKGINPKFIENFVKGKNNLISMKNFPVTPNS
HRVNECGQQMRFDERTRFYRKLVDFKGSANELSARVLDCLKMSKLKSEKVSAKVTGPQMF
IQNEDAAPKMSGLKFIKELILGKRSDHTFRMVVVGDPSIKIDEIGVPCHIAQVMQISEQL
NSQNWENLGLRILTRGETYVRRDGGLVRVTMKDDKLQIGDTIHRPLRDGDIVLINRPPSI
HPHSLIALSVKILPTKSILSLNPLICSPFRGDFDGDCYHGYVPQSMDSRVELQELVALDK
QLIDIQSGQNLLSLTQDTLTAAHLVIEDGVLLNRPQMQQLQMFCQQARSLQLPAIFKSSS
CNNNSKATSSDTCWWTGKQLFSLLLPQDFYYKCPSSAVQIIKGEVIFSQNASSWLRDTKG
NLLHSLLSHCQGEFLDFLHAAQGVLSEWLSMRGLSVSLADMYLSSDSHSRKNLIDEVRCG
LRDAEHTSLVKLLMVDSNLDFLSGNFEESESARDFGVDHLFYDRQKSAALNQVYVSAFKQ
VFKDIQNLFYQYASEDNSFLTMLKAGSKKSNLTRAVQHGLCLGLQHSSVTLSFRIPQQLS
CGAWNSQKELDSLNLTDDFPKNSSSYIPSAVIQSSFLSGLNPLECFVHSLTNRDGSFGGH
ADISGTLTRRIMFFMRDLCMGYDGTVRSAFGNQVVQFSHNINPTFPENIPDETPINGVCT
AGGQPVGSWAACAISEAAYSALDQPISALESSPLLNLKEILECGGNKVNNAASLFISEKL
RRVPYGFEYAALEIKSHLERVQFLDIVSTVMIMLEPCGQTHVSSWACHFHINKVMAERKQ
IKVQSVIDALHLSWNSNRVKLNSQLPDLQITSNRDCSQEKDIASFCINIRIVGSNMNSGT
QLETLEDTVIPLFLKSVIKGSSNVHKVDILWKDILKISTSHMGVSGELYVRVFMSETCDR
SRLWAVLLDDCIQLMDMIDWNRSYAEDIKVAASAFGIEFAKAQFLNKLASAVSDTGKAVL
PEHLLLIADCLSFTGEFVALSASGLARQRKQTEVSSPFTQACFSSPSDCFINAAKKGTVD
NLQGSIDALSWGNSPSLGTGAQFDIIYSGKGHEVDKPENIYNLLRSQVSAGGQKVSVPCE
FSNISIKSLAKKSEFLRKNFKATHFIWMSKELRHILQKYKINQQLRELDEAIAAAALFFH
PRSSEKIGCGLQGIKIGLSLKDSTSRCFQLMRTDGTVEEFSYHRCMHNALNLTAPTSAEK
YQSMWLKERT
NT seq 4353 nt   +upstreamnt  +downstreamnt
atggattatgattatgcagagcaagcagttgcatcaggattcttgagcagcattacgttt
ggcattgtgactgaggaagatgtagagaagatgtctgttaaagaaattgaagtacccaac
gatgtaatacatccaacgcttggaattccttccccaatgtcttctcagtgcctaacatgc
gatgcaaaaaatatgaaaacctgtgaaggtcatttcgggtgtatcaaatttccgcacaca
attctccacccttacttcatatcagatgtagcaaagattttgaatagaatctgtgtaaaa
tgtaaatctgaacggactaggaccaagagtgctagttcaccatcaactaataagaagcat
gggcgtagcacatcaactagtaataagcatgggcgttgcaaatattgtgatgggcatttg
aaagatctatatccaagaccaatatttaaagtatccagcccagaaatatttggaagtaca
gtaatttatgctaaaataagtgaacgcttgagaactccaagtatagcttctgattactgg
gatttccttcagaatgatccacaagaagaaggaagtgcattaaaaccttatgaaagaagt
ctatcacatgcccaggtgcaggaattgcttaagggaatcaatcctaaatttattgaaaat
tttgtcaaaggcaaaaataacttgatctcgatgaaaaattttcctgttactcccaactcc
catcgtgtaaatgaatgcggacagcaaatgagatttgatgaacgaacaaggttttatagg
aagctagttgatttcaaaggttcagctaatgagctgagtgctcgtgttctggactgtctt
aaaatgtctaagctaaaatcggagaaggtgtctgcgaaagttactggtcctcagatgttt
attcaaaatgaagatgctgctccaaagatgtctggtctgaagttcataaaagagcttatt
ttggggaaacgatctgatcatactttccgcatggttgtagtgggtgatcccagtataaaa
attgatgaaattggtgtgccttgtcatattgcacaggtaatgcaaatttctgaacagctg
aattcacaaaactgggaaaatcttggtttaaggattttgactagaggggaaacctatgtt
cgtcgagatggtggactagttcgtgtaacaatgaaggatgataagttgcagattggggac
actatacacagacctctccgtgatggagatattgttttgatcaataggccaccatctatt
caccctcattcactgattgctctatctgttaaaattcttcctacaaagtccattctttct
ctcaatcctttaatctgctctccttttcgtggggatttcgatggtgactgttatcatggt
tatgttccacaatccatggattctagagtagagctgcaagagctggttgctttggacaag
cagttgatagatattcagagtggtcaaaatcttctatcacttacacaggatactttaacc
gccgctcatttagtaatagaggacggagtgcttttaaaccgtcctcaaatgcagcaactt
caaatgttttgtcaacaagctcgttcactgcaattgccagccattttcaagtcatcttcg
tgcaataataattccaaagccacttcatcagatacctgttggtggacaggcaaacagtta
ttcagcttgcttctacctcaagatttttattataagtgtccgtcaagcgctgttcaaatt
attaaaggggaagtcatattttctcaaaatgcttcttcttggttacgtgataccaaggga
aaccttctgcatagcctactaagtcactgccaaggagaatttcttgacttcctacatgct
gctcagggagttctcagcgagtggttgtcaatgcggggactaagtgtttcactggctgac
atgtacctctcttccgattcacactcccggaagaatttgattgatgaagttcgttgtggt
ctgcgggatgctgagcacacatctcttgtaaaactattgatggtggattccaatctggat
ttcctaagtggaaactttgaagaaagtgagtctgctagagattttggagttgaccacttg
ttttatgaccgacagaagtcagctgctctcaatcaagtctatgtttctgcattcaagcag
gtgttcaaggatattcagaacctattttaccagtatgcaagtgaagacaattctttttta
accatgttaaaggcgggaagcaagaagagtaacttaactcgggctgtccagcatggactt
tgccttggcttgcagcactcttcagtaacactttctttcagaataccccagcaactttct
tgtggcgcatggaatagtcaaaaggaactggattcactcaatttaactgatgattttcca
aaaaattccagttcatacatcccttctgcagtaatccaaagttcttttctctcaggattg
aatccactagagtgttttgttcactcactgacaaacagagatggttcttttggtggtcat
gcagatatatccggtacgctgactcgaaggataatgtttttcatgcgggacttgtgcatg
gggtatgacgggacagtgagaagtgcctttggcaaccaagttgttcaattttctcataat
attaatcccacttttccagaaaatattcctgatgagacacctataaatggtgtttgcaca
gcgggtggccaaccagttggttcatgggctgcttgcgctatttctgaagcggcatatagt
gccctggatcaaccaattagtgcacttgaatcctctcctcttctaaatttgaaggaaata
ttagagtgtggcggcaataaggtgaacaatgcagcctctttattcatttcagaaaagctc
agaagggtgccctatgggtttgaatatgcagccttggagattaaaagtcatttggaaaga
gtacaattcttagacattgtttctacggtgatgataatgttggaaccttgtggacagacc
catgttagttcatgggcttgccattttcatataaacaaggtaatggcagaaagaaaacag
ataaaagtccaatctgtcattgacgcgctccacctgagttggaattctaatcgagtaaaa
ctgaattcccaacttccagacttgcagattactagcaacagagactgttcccaggagaaa
gatattgcctcattttgtatcaatattagaatagttggaagcaacatgaactccggtaca
cagctggaaactcttgaagacacagtgatacctttatttctcaaaagtgtcataaaagga
tcctcaaatgtgcataaggtggatatcttatggaaagatattttgaaaatatcaacttca
catatgggtgtatctggggagctttatgtacgagttttcatgtcagagacctgcgacaga
tcgagattgtgggctgtcctattggatgattgcatccaactgatggatatgattgattgg
aaccgcagttatgctgaagatattaaagttgcagcctcagcctttggaattgagtttgca
aaggcacagtttttaaataaactggcatctgcagtatctgatactgggaaggctgtacta
cctgaacatttacttcttattgctgattgtctttcatttacgggagaatttgttgctctg
agtgcgagtgggctggcacgacaaagaaaacagacagaagtttcttcaccctttacgcaa
gcatgcttttccagtccctctgattgctttataaatgctgcaaaaaagggtaccgtggat
aatcttcagggtagcatagatgcattgtcgtggggaaactctccttctctagggactggt
gcacaatttgatatcatatactccgggaagggccatgaagtagataaacccgaaaatatt
tataatctgcttcgtagccaagtcagtgccggtggccagaaagtcagcgtaccttgtgaa
ttcagcaatatatccatcaaatctcttgccaagaaaagcgaatttttgagaaagaatttc
aaggcaacacacttcatatggatgtctaaagagttgaggcatatcttacagaagtataaa
attaatcaacaattaagggagttggacgaggccattgcagcggcggctctcttctttcac
cctcgatcatctgaaaagattggatgtgggcttcaaggaattaaaattggtttaagctta
aaggattcaactagccgctgctttcagttgatgagaaccgatggaacagttgaggaattt
tcttaccacaggtgtatgcataacgctctcaacctaactgctcccacaagtgcggaaaaa
taccaatcaatgtggttgaaagagagaacctag

DBGET integrated database retrieval system