Apium graveolens (celery): 141713619
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Entry
141713619 CDS
T11340
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141713619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141713619
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
141713619
Complex C
U5 SnRNP specific factors
141713619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
EFL1
Roc
EF-G_D2
Dynamin_N
Ras
Septin
SRPRB
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
141713619
NCBI-ProteinID:
XP_074373219
LinkDB
All DBs
Position
3:294322983..294329520
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AA seq
988 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREDEDEDLPDKTDEENADASDEENGGRANGWMTTTD
DIDIDNQIVLAEDKKYYPTAEEVYGEEVETLVMDEDAQPLEQPIIKPVRNVKFELGVKDS
STYVSTDFLLGLSSNPSLVRNVALVGHLQHGKTVFMDMLIEQTHHISTFDQNSEKHMRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLV
VDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNQ
ITAVSATAGDVQIIDPVVGNVCFASGSAGWCFTLHSFAKLYVKLHGIPFDATKFASRLWG
DYYFDPDTRGFKKKQPSSGVERSFVQFVLEPLYKIYSQVVGEHKKSVETTLAELGVTLSN
AAYKLNVKPLLRLACSSVFGSATGFTDMLVHHIPSAKDSAPRKVEHTYTGPTDSAIYRAM
VDSDPSGPLMVHVTKLYPKSDCSVFDAFGRVYSGELHTGQTLRVLGEGYSPDDEEDMTIK
EVMKLWVYQARYRIPVGKAPPGSWVLIEGVDASIMKTATLCSSNYDEDVYIFRSLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVV
SIDWPRKKLGDFFKSKYDWDLLAARSIWAFGPDKQGPNILLDDTLSGEVDKLTLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCVSVFDHWAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSISKFFDEAMVVELAQQDADLHLQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttatatgatgaattcggtaactacattggaccggaaattgagtctgac
caggagagtgatagagaggacgaagacgaggatcttcctgataaaaccgatgaggagaat
gccgatgcttctgatgaagagaatggaggtcgggcgaatgggtggatgactactactgat
gatattgatattgataatcagattgttcttgcggaggacaagaagtattatccgactgcg
gaggaggtttatggggaagaggttgagacgttggttatggacgaagatgcacagcctctt
gagcaaccgataattaagcctgttaggaatgttaagtttgagttgggcgttaaagattct
tctacttatgtctcgactgactttcttttgggtctttcttcaaacccgtctttggttcgt
aatgttgcgttggtgggacacttgcaacatgggaagactgtttttatggatatgttgatt
gagcaaacacatcatatatcaacgtttgatcagaacagtgagaagcacatgagatatact
gatacaaggatagacgagcaagagagaaggatatcaattaaggcagtgcctatgtcactt
gttctcgaggatagcaattcgaagtcctatttgtgcaacataatggatacgcctggtcat
gtcaatttctccgatgagatgactgctgcccttcgacttgctgatggtgcagttttggtt
gtggatgcagctgaaggagtaatggttaacactgagagggctattcgtcatgcaattcaa
gagcgtcttccaatagttgtcgtgataaacaaggttgacaggttgataactgaactcaaa
ctgcctccaaaagatgcttaccacaagcttaggcacacaattgaagtcatcaataaccaa
ataactgccgtctctgcaacagctggagatgttcaaatcatcgacccagttgttggaaat
gtttgttttgcaagtggaagtgcagggtggtgttttactttgcactcatttgcaaaacta
tatgttaaacttcatgggattccatttgatgctacaaagtttgcctcacgtctttgggga
gactattactttgatcctgatactaggggttttaagaagaaacaaccttcaagtggagtg
gaaaggtcatttgtccagtttgtgcttgaaccgctctataaaatttacagccaagtagtt
ggtgaacataaaaagagtgtggagacaacactagctgaacttggtgtaacccttagcaat
gcagcttacaagctaaatgttaagccgttgctgagattggcatgtagctcagtttttggt
tctgcaacaggcttcacagatatgcttgttcatcacattccatcggccaaagattcggcg
cccaggaaggttgaacatacatacactggccctactgactctgctatatacagagccatg
gtagactctgatccttctggccccttgatggttcacgtcaccaaattgtaccccaagtct
gactgtagtgtttttgatgcatttggtcgggtttacagtggtgaactgcatacaggccaa
actctccgtgttcttggtgaaggatattcaccagatgatgaagaggatatgaccataaag
gaagttatgaaattatgggtttatcaagctcgttatagaatacctgttggaaaggctcct
cctggttcttgggttttaattgaaggcgtggatgcctcaattatgaagactgcaactctt
tgcagttcaaattatgatgaggatgtatacatattccggtctcttcagtttaacacgctt
cctgttgtgaaaacagcaactgagcctttaaatccaagtgagctgcccaaaatggttgag
ggtcttaggaagattagcaagagttatcccctggcgattactaaagttgaggagtctgga
gagcacaccatcttgggtactggagagttgtacttagattctataatgaaggatctgagg
gagctgtactcagaagtggaagtgaaggtggcagatcctgtcgtctcattctgtgaaaca
gtggtggagtcctcatcaatgaaatgttttgctgaaacacctaacaaaaagaataagata
acaatgattgcagagccattggagagagggcttgccgaagacattgaaaatggtgttgtc
agcattgactggccgcgtaagaaactgggtgatttctttaaatcaaaatatgactgggat
ttacttgctgcacggtcgatttgggcatttgggcctgataaacagggacctaacattcta
ctggatgacacactctccggtgaagtggataaattgacgctgaacgctgttaaagattcc
attgttcaaggatttcagtggggtgctcgggaaggacccttgtgtgatgaacccatcaga
aatgttaaattcaaaattgttgatgcaaggattgcacccgaaccattgcatcgtgggact
ggtcagatcattccaacagctagacgagtcgcttattcagctttccttatggcgactcca
cgactgatggagcctgtatattatgtggagattcaaacacctatagattgtgtgtctgcc
atatacacggtgttgtcacgaaggagggggcatgtcactgctgatgttcctcaaccaggg
acgccagcatatattgtcaaggcgttcctaccagttatcgagtcatttggatttgaaaca
gatctaaggtatcacactcaagggcaggcattttgtgtttctgtttttgatcattgggct
atagttccaggagaccctctggacaaaaacatcgtgttaagacctctggagcctgctcct
atccagcatttggctcgggagtttatggtgaagactagacgcagaaagggaatgagtgaa
gatgtcagcatcagcaagttttttgatgaagccatggttgtggagcttgctcagcaggat
gccgatctccatctgcaaatgatttaa
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