Apium graveolens (celery): 141721568
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Entry
141721568 CDS
T11340
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
agrv Apium graveolens (celery)
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
agrv03036
]
141721568
03400 DNA repair and recombination proteins [BR:
agrv03400
]
141721568
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
141721568
DNA repair and recombination proteins [BR:
agrv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
141721568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
NYD-SP28
PaaX_C
Motif
Other DBs
NCBI-GeneID:
141721568
NCBI-ProteinID:
XP_074380624
LinkDB
All DBs
Position
4:307071972..307090118
Genome browser
AA seq
1612 aa
AA seq
DB search
MASGNKSSASKRASSDDNDSTRPHKVKKMKCLDLILVEKVYKFRVLLPNSDCVTMRVVDP
PNNQMPVVVFADLVKEEYERVGSRIRRREIDWDSPDLCLIDRFENHIKDVICFEIYETDK
VYTLRLNDGSNGDEVYENMWDLTPDVELLSELPQEYAFESALADLIDNSLQAVWSNSNKR
RLISVDLSEDKISIFDNGPGMDDSEDNSIVKWGKMGSSLHRSYRGRAIGGKPPYLKPFFG
MFGYGGPISSMHLASHTIVSSKTKNSKKVYTLHLRRDALLSSSGSDKTWQAPGGLRDPSE
NEMKLAPDGSFTKVEMFQMKMRSLNVAHLQSKLKDIYFPYIQCDDNTKTGKTITPIEFQV
NGIDLAEVEGGEVAITNLNSCHGPHFVLQLHFTSNQEVHLQKSPSKGASQEANARLKFVY
LPIVQGKENIDRILEKLEAEGCGVAETFESFSRASIRCLGRLLPDARWAWLPFMDLKQRK
VDRAQILKTCCSRVKCFIETDGGFYPTPSKTDLSHHHCYTTALKNFGQKSLEKDRDVNVE
IFKDGKKLSLQQVEKQYQDWIFQMHNLYDEESDCGEDEPVIIINPSNKKQLVISSDVIRV
HRHIRRKGKSWRSGQKIKVLKGACSGVYKNNIYCVLEYILLEGFQGDAGGETRIICRQLG
ISDEKGCLIFEDEDGNPAIDIRESKSLPISIIDTGKCLSVETAEWISQLEKRQKKIPSSI
DILSASHCEELEVEGSLPFDAVVTAGHASPEEVIAVVRPASYGSVAVSEKLDQKHIAVTD
LDMVLEIKLNAEDKDLQKTSHVHSFRASPSSRKGFRGLYIFSVNPKLIFEKAGEYTFSFH
IILQKESDCSSYVNSVRVKAQSQVMRWALVSDMQHAKLSVRVGSHFPPISIACYDVYENR
TSFRHVPKLIAKVSTKQGVILFQSETLKSHLLSKCSVITAENILVKSSEVDLIRPGYEAQ
LTICSKDEPFDVSVPCKVLPGSIDHLNAKPKDFMKHLLPGNVVQELKLEVFDAYGNHVKQ
GSDLSLGVDGFHFQQKTNIVQVDDHGRVDLSGLLKVSKGYGESVSLSVFSSKSNKLLFKV
KSQIEKRMLRVATKIPEKCCAGSQLEDVVFEIVNSDGVVDETIDDNEKGDMSHSLVLKSD
STDMDDTVKYSFRHGCCTVRTIQLPEIEGSFSFRAAHSRFPKLNMTITVLVETAPEIVYE
SSQPQCTAEEISLQNNLSGFRIPKVEHDDNAMVLGPSPDSAKSIGNLVKSLYDERKELED
KFLQDGRRIGEHEQKLKTFHAQRLEYEKALSELQASLEANSNGDSSNSPKKERMLGEIES
RAHTAASVVCKVLKDKKYHDFSKDILGVVALLGSVETNELARILTEFLGEEQMLGVVCKS
YKAAHNLETCDVHGNVNCSTGLQALASALGTSLDGRYSVICLEDVRPYEGECDSGDPQRR
LLLSDPTLPNGKTPPGFSGYAVNMIYLDANQLYTRTSGGKGLRETLFYHLLGEVQVYRTR
ETMRKALECIHHGAVSLDGGIVRKTGVISLGCGKPSIHFPVVAPQSQNSRYQRMIDAKKS
MLRTINDQLDKENELYDETLKKFEKSKNKYAKFLDAKASLLQQFNDSAWNSP
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaggtaataaaagcagtgcaagcaagagggctagttctgatgataatgattcc
accaggcctcataaagtgaaaaagatgaagtgtttagatttgatacttgttgagaaagtt
tacaagtttcgtgttcttttgcctaatagtgattgtgttacgatgcgagttgttgatcct
ccgaataaccaaatgcctgttgtggtgtttgctgatttggttaaagaggagtatgaaaga
gtggggagtaggattaggaggagggaaattgattgggatagtcctgatttgtgtcttatt
gatcggttcgagaatcatataaaagatgtgatttgtttcgagatttatgaaactgataag
gtgtacaccttgaggcttaatgatggatccaatggagatgaagtttatgagaacatgtgg
gatttgaccccggatgttgagttgttgagtgagcttccccaagaatatgcgtttgaaagt
gcgctggctgacttgattgacaattcacttcaagctgtatggtctaacagtaataagaga
agactgattagtgtggatttaagcgaagacaaaatttccatatttgacaatggtcctggc
atggatgatagcgaggataactctattgtaaagtgggggaagatgggttcctcgcttcac
agatcatatagaggacgagcaattggtggcaagcctccgtacctgaagcctttctttggt
atgtttggatatgggggacctatttcatctatgcatctagcaagccatactatcgtttcc
tccaagacaaagaattccaagaaagtttatactctacatcttcgaagagatgctttacta
agcagttccggctcagacaagacctggcaggcgcctggcggcctaagagacccttcagaa
aatgaaatgaaattggcacctgatggaagcttcacaaaggttgaaatgtttcagatgaaa
atgagaagtttaaatgtagctcacctgcaaagcaaattaaaggacatctattttccttat
atacagtgtgatgacaacaccaagacaggcaaaaccatcacaccaatcgagtttcaggtc
aatggaattgatttagcagaagtagaaggtggcgaagtagctattaccaacttaaactcc
tgccatggtccacactttgttttacaactgcattttacttccaatcaggaagttcatttg
caaaagagtccaagtaaaggagcatctcaagaagcaaatgcacggttaaagtttgtatac
ttacctattgttcagggtaaagaaaacattgataggattttagagaagctagaagctgaa
ggatgtggtgtcgccgaaacctttgaaagctttagtcgggcttccattcgatgcttagga
cgtcttcttccagatgctcgctgggcgtggcttccttttatggatcttaagcaacgaaag
gttgacagggcccaaatattgaagacatgttgctcaagagtgaaatgcttcattgaaact
gatggtggcttttacccaaccccatcgaagaccgatttatcacatcaccattgttacacc
actgctttgaagaactttggccagaagtctttagagaaagatagagatgtaaatgttgaa
atttttaaagatggaaagaaactatcacttcagcaagtggagaaacaatatcaagactgg
attttccagatgcataatctctatgatgaagagagtgattgtggtgaggatgaacctgtt
atcatcattaatccctcgaacaagaaacagcttgtgatttcttcagatgttatcagggtt
catagacacatcaggaggaagggaaaatcctggcggtcgggacagaaaattaaagttttg
aaaggagcgtgctcaggagtttataaaaacaatatctattgtgttctagaatacattctt
ttagaaggatttcaaggcgatgcaggtggggaaactcgaattatctgcaggcagttaggt
atttcagatgaaaagggatgccttatttttgaggacgaagacggaaatccagcaatagat
atccgtgaatctaagtcacttcctattagtattattgatacgggaaagtgtctgtctgtt
gaaactgccgagtggatttcgcaacttgaaaagcggcagaagaaaattccatcatcaatc
gatattcttagtgccagtcattgtgaagaactggaagttgaagggtcattgccttttgat
gctgtcgtcactgctggtcatgcttctcccgaagaagttatagcagttgttcgtcctgcc
tcttatggtagtgtggcggtttctgaaaaattagaccagaagcatattgcagtgacagac
ttagatatggttctagaaataaaattaaatgctgaagataaggatctacaaaaaactagc
catgttcattcttttcgtgcttcaccttcatctcgtaaagggtttcgtggtctatatata
ttctcagtgaaccccaaattgatatttgaaaaagctggtgaatatacattttcctttcac
attattcttcagaaagaatcggactgcagtagttatgttaatagtgtaagggttaaggca
cagtcccaggttatgaggtgggcgcttgtgagtgatatgcaacatgcaaagcttagtgta
agggttggttcgcatttccccccaatttctattgcatgctacgatgtctatgaaaaccgt
acatcatttcggcatgtccctaaattgatagctaaagtttcaacaaagcagggtgttatt
ttgtttcaatctgaaacactgaaatcgcatcttttatccaaatgttcagttattacggca
gagaacatactggttaaaagtagcgaagtggacctaattcgccctggctatgaagcccag
ttaacgatatgttcaaaagatgaaccctttgacgtgagcgttccatgcaaagttcttcca
ggatcaatagaccatcttaatgctaaaccaaaagattttatgaagcatctacttcctgga
aatgttgtgcaagagctcaaactagaggtgtttgatgcctatggtaatcacgttaaacaa
ggttcagatttgtcattgggtgtggatggatttcattttcaacagaaaacaaacatagta
caggtggatgatcatggacgtgttgatctcagtggtctcttgaaagtttcaaaaggctat
ggggaaagtgtatccctttctgttttctcaagcaaaagcaacaaattgctttttaaagtg
aaatcccaaattgagaaaagaatgcttagagttgcaactaagatacctgagaaatgttgt
gctggttctcaactggaagatgttgtgtttgaaattgttaactctgatggtgttgtggat
gaaacaatcgatgataacgagaagggtgacatgtcccattctcttgtattgaagtctgat
tcaacagatatggatgatactgtgaaatacagctttcgtcatggttgctgcactgttcgt
actattcagctccctgaaatagaaggaagcttctcctttcgtgctgcacattctcgcttc
ccaaagctcaacatgaccataacggtgcttgtagagacagcccctgaaattgtgtatgag
agtagccagcctcagtgtacagctgaagaaatctcactccaaaataatttatctggtttt
agaattccaaaagttgagcatgacgataatgcaatggtgctgggaccaagcccagactct
gctaagagcataggaaacttagttaagagcctttatgatgagcggaaggaacttgaagac
aagtttttgcaggatggaaggcgcattggagagcatgaacaaaagcttaaaacattccat
gcccaacggttggaatatgagaaagccctgtccgaattgcaagcttcactggaagctaat
tctaatggggattcaagtaattcacctaaaaaagagagaatgttgggagagattgaatca
agggctcacacagctgcttctgttgtctgcaaagtactgaaagacaagaaatatcatgat
ttctcaaaagatattttaggtgtggttgcgcttcttggaagtgttgaaacaaatgagctt
gccaggattttgacagagttccttggagaggagcaaatgcttggagttgtgtgtaaatcc
tataaagctgctcataatcttgaaacgtgtgatgtacatggaaatgtgaactgttccact
ggtcttcaagcattggcatctgcacttggcacatctttagatggacgttattctgttatc
tgtcttgaagatgtaaggccatacgaaggcgaatgtgacagtggagatcctcagagaagg
cttttgttgtctgatcctactttaccaaatggaaagactccaccaggattttcaggatat
gctgtcaatatgatatatttggatgctaatcagttatacacaaggacttctggaggtaaa
ggtctacgggagaccttattctatcatcttttaggtgaggtacaggtttatagaactagg
gaaacaatgagaaaagcactagaatgcatccaccatggtgcggtttctttggatggaggt
atcgtaaggaaaactggagttatttctctaggatgtgggaaaccctctatacactttcca
gttgttgcacctcaaagtcaaaattctcgctatcaacgtatgattgatgcaaagaagtcc
atgttgagaacaataaatgaccagctagacaaagaaaatgaattatatgacgagaccctg
aaaaagtttgagaagagcaaaaacaagtatgcgaaattcttggatgcaaaggcatcatta
ctgcaacagttcaatgatagtgcatggaactccccctag
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integrated database retrieval system
