Agrobacterium sp. 33MFTa1.1: EYD00_08540
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Entry
EYD00_08540 CDS
T05906
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agt
Agrobacterium sp. 33MFTa1.1
Pathway
agt03030
DNA replication
agt03410
Base excision repair
agt03420
Nucleotide excision repair
agt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EYD00_08540 (ligA)
03410 Base excision repair
EYD00_08540 (ligA)
03420 Nucleotide excision repair
EYD00_08540 (ligA)
03430 Mismatch repair
EYD00_08540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agt03032
]
EYD00_08540 (ligA)
03400 DNA repair and recombination proteins [BR:
agt03400
]
EYD00_08540 (ligA)
Enzymes [BR:
agt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EYD00_08540 (ligA)
DNA replication proteins [BR:
agt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EYD00_08540 (ligA)
DNA repair and recombination proteins [BR:
agt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EYD00_08540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EYD00_08540 (ligA)
MMR (mismatch excision repair)
DNA ligase
EYD00_08540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EYD00_08540 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
RUBY_RBDX
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QBJ13432
LinkDB
All DBs
Position
circular:complement(1660972..1663146)
Genome browser
AA seq
724 aa
AA seq
DB search
MSKDQKPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDAEYDALKRRNDAIEAN
FPALVRADSPSKKVGFAPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGHLPDD
SIAFTAEPKIDGLSMSIRYENRRLKTAATRGDGTTGENVTPNIRTIKEIPNELPADAPDV
VEVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYAL
GEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPDLDYD
IDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARL
TPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVL
LEKRPAGAAKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVS
RNAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQDASHLTKLENIDGFGKVSVR
KLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYDHFEESMKAAADPASDAWA
ELNAIDGIGEVVARAIVEFYKEPRNLDVIDRLIRELRPKEAEKPSTEGSPVAGKTVVFTG
SLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDEDEWLA
LIGG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagaccagaaacccgttgaaaacctcaccgagcttgaagcctcttcggagctt
gcatttctggcggccgagcttgcccgccatgacgcgctttaccacggcaaggatgcgccg
gagatttccgatgcggagtatgacgcgctgaagcggcgcaacgacgccatcgaagcgaat
ttcccggcgctggtgcgggccgacagcccatcgaaaaaagtaggcttcgcgccgcttccg
acctttgcgcccatcgtgcatgcgcgaccgatgctgtcgctcgacaatacgttctcggaa
gaagatctgcgcgacttcgtcagttcggtttatcgtttcctcgggcatctgcctgatgac
tctattgctttcactgcggaaccgaagatcgacgggctttccatgtccatccgctacgaa
aaccgcaggctgaagacagcggcgacgcgcggtgacggcacgaccggcgaaaatgtcact
cccaatatcaggaccatcaaggaaattccgaacgagctgcccgccgacgcgcccgatgtg
gtggaagtgcgcggcgaggtctatatggccaaaagcgactttctggcgctcaacgcccag
atggaagcggaaggcaagcagacctacgtgaacccgcgcaatactgcctccggctccctg
cgtcagctggacgccaatgtgacggcgaaacgcaagctgcggtttttcgcctacgccctc
ggcgaggtttcgaatggcggtcagccgacgcggattgctgatacccaatatggcatcgtc
gagaagttcagggaatggggtttcccggttaatccgctgatgaagcgattcacgtccgcc
cagcaattgcttgagcattataatgaaatcggtgttgcgcggcccgatctcgattacgat
atcgacggtgtggtctacaaggtcgaccggcttgatctgcaggaacggcttggcttccgc
tcgcgcagcccgcgttgggcgaccgcgcataaatttccagcagagcaagccttcacgacg
gttgaaaatatcgaaattcaggttggccgcaccggcgcgctgacacctgtcgcgcgtctt
acccccatcactgtcggcggtgtcgtcgttaccaatgccacgctgcataatgccgattat
atcgagggcatcgggaatagcggtgagcgcatccgcccggaagatcacgatatccgcatc
ggcgacactgttatcgtgcagcgggccggcgatgtcattccgcaggttctggacgtgctt
ctggaaaagcgaccggccggggcggcaaaatacgccttcccggaaaaatgtccggtctgc
ggcagccatgcggtgcgggagcgtaatgagaagaccggcaagctcgattcggtcacgcgc
tgcaccggcggtttcgtctgccgggcccaggcggtggagcatctgaaacatttcgtctcg
cgcaatgccttcgatatcgaagggctgggcaccaagcagatcgatttcttcttcgaaagt
gacgatcctgcgctctcgatcaagaccgcacccgacatcttcacgctgaaggcgcgtcag
gatgcttcccatctgaccaagctcgaaaatatcgacggttttggcaaggtcagcgtcagg
aagctgttcgacgccatcgatgcccgccgcgagatcgatctgcacaggctcatcttcgcg
ctgggcatccgccatgtgggtgagactacggcgaagcttctggcgcgctcctatggcact
tacgaccatttcgaagaaagcatgaaggcggcggcggatcccgcaagcgatgcgtgggcc
gagcttaatgccatcgacggcatcggcgaggtggtggcccgcgccattgtcgagttctac
aaggagccacgcaacctagacgtcatcgatcggctgataagggaacttcgtccgaaagag
gcggaaaagccttctacggaaggcagcccggtggcaggcaagacggtggtgtttaccggc
tcgctggagaagtttacccgcgacgaggcgaaggcccgggcggaaagtctgggcgccaag
gttgccggttccgtttcgaaaaagaccgatattctggtggcggggccgggagcgggctcc
aagcttgccaaggcggcggaactgggcgtgcagaccatggatgaggacgagtggctggcg
ctgatcggcggctga
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