Agreia sp. COWG: AGREI_1150
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Entry
AGREI_1150 CDS
T07018
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agx
Agreia sp. COWG
Pathway
agx03030
DNA replication
agx03410
Base excision repair
agx03420
Nucleotide excision repair
agx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AGREI_1150 (ligA)
03410 Base excision repair
AGREI_1150 (ligA)
03420 Nucleotide excision repair
AGREI_1150 (ligA)
03430 Mismatch repair
AGREI_1150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agx03032
]
AGREI_1150 (ligA)
03400 DNA repair and recombination proteins [BR:
agx03400
]
AGREI_1150 (ligA)
Enzymes [BR:
agx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AGREI_1150 (ligA)
DNA replication proteins [BR:
agx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AGREI_1150 (ligA)
DNA repair and recombination proteins [BR:
agx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AGREI_1150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AGREI_1150 (ligA)
MMR (mismatch excision repair)
DNA ligase
AGREI_1150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AGREI_1150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
HHH
BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
CAD5995793
LinkDB
All DBs
Position
COWG:1119001..1121322
Genome browser
AA seq
773 aa
AA seq
DB search
MADVLPTEATDDLERAKAEVERLTSRIIELRDQYYEKNASTVSDSDYDALVRRLGELERA
HPELQSHDSPTQTVGGRAETAMFTPVTHAERMLSLDNVFSEEELREWAAKIERDAGRSAV
RYLSELKIDGLAINLRYENGVLVTAATRGDGVVGEDVTDNVLQIKQIPARLRGTGHPAIV
EVRGEIFFPVASFDELNAAQEAAGERVFANPRNAAAGSLRQKSEGKNAKQLALVEDRLSR
LRMLVHGIGAWPNPPVDAQSEVYGLLAEWGLPTSTYYRVFGEVDEVVEFIRYYGINRASV
EHQIDGIVIKVDNLALHEELGATSRAPRWATAYKYPPEEVNTRLLDIVVSVGRTGRATPF
AVMQKVEVAGSEVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGTER
EFVMPENCPECGTRLAPAKEGDIDLRCPNARSCPAQVRGRVEHVGSRGGLDIEVLGEVSA
AALTQPLEPAEPPLETEAGLFALQMRDIFPITVLVRDNETGMVKLTDDGEPKRVQPFQRR
RQKRDGAYDPESADFAGDEVAVPSTNAIKLLSEIEKAKTKPLWRMLVSLSIRHVGPVAAR
ALADYFGSLDAIRAASRDELAAVDGVGPIIADALIEWFGVDWHVAIVEAWAAAGVQFATP
GHPGPGAAAVEGGVLSGVTVVATGSLEGFTREGALEAIITAGGKAASSVSKKTDFVAAGP
GAGSKLTKAEALGLRIIDAEQFAILVTQGPDSLGPAPEAEPTDGETDAGQPGA
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtgctgcccaccgaggccaccgacgacctcgagcgggccaaggccgaggtc
gagcggctgacctcgcgcatcatcgagttgcgcgaccagtactacgagaagaatgcctcc
acggtctcggactccgactacgacgccctcgttcgcagactcggcgaactcgagcgagca
caccccgagctgcagagccacgacagcccgacccagacggtggggggccgcgccgagacc
gccatgttcacgcccgtcacccatgccgagcgcatgctcagcctcgacaacgtgttcagc
gaagaagagctgcgcgagtgggcggccaagatcgagcgcgacgccggtcgcagcgcggtg
cgctacctgtcggagctcaagatcgacggcctcgccatcaacctccgctatgagaacggc
gtgctggtcacggcggccacccgcggagacggcgtcgtcggcgaagacgtcaccgacaac
gtgctgcagatcaagcagattcccgcgcggctgaggggcaccgggcatccggccatcgtc
gaggtccgcggcgagatcttctttccggtcgcctcgttcgacgagctgaacgcggctcaa
gaggccgccggcgaaagggtgttcgccaatccgcgcaacgcggccgcgggctccctgcgc
cagaagtccgagggcaagaacgccaagcagctcgccttggtcgaggatcgcctctcccgg
ctgaggatgctggtgcacggtatcggtgcctggccgaaccctcccgtcgatgcccagagc
gaggtctacggtctgctcgccgagtggggcctgcccacctcgacctactaccgcgtgttc
ggcgaggtcgacgaggtggtggagttcatccgctactacggcatcaatcgagcgagcgtc
gagcaccagatcgacggcatcgtgatcaaggtcgacaacctcgccctgcacgaagaactg
ggggccacgtcgcgcgcgccccgctgggcgaccgcctacaagtacccgcccgaagaggtg
aacacccgcctgctcgacatcgtggtgagtgtcggccgcaccggccgggccacacccttc
gccgtgatgcagaaggtcgaggtcgccggcagcgaggttcgccaggccacgctgcacaac
caagacgtggtcaaggccaagggcgtactcatcggcgacacggtcgtgctgcgcaaggcc
ggagacgtcattcccgaggtgctcggcccggtggtcgagctgcgcgacggcaccgagcgc
gaattcgtgatgcccgagaactgcccggagtgcggaacgaggctggcgccggcgaaagag
ggcgacatcgacctgcgctgcccgaacgcccgcagctgccccgcgcaggtgcgcggccgc
gtcgagcacgtcggctcccgcgggggcctcgatatcgaggtgctcggagaggtctcagct
gcggcgctcacccagcccctcgaaccggccgagccgccgctcgagacagaggccggcctc
tttgctctgcagatgcgcgacatcttccccatcaccgtgctcgtgcgcgacaacgagacg
ggcatggtcaagctcaccgacgacggagagcccaagcgggtgcagccgttccagcgccgt
cgacagaaaagagatggcgcctacgaccccgaatcggccgacttcgccggcgacgaggtc
gccgtgccctccacgaacgcgatcaagctgctctccgagatcgagaaggccaagaccaag
cccctctggcgcatgctggtgtcgctgtcgatcaggcacgtcggccctgtggctgcgcgg
gcgctcgccgactacttcggatcgctcgacgcgattcgcgctgcgagtcgcgatgagctg
gccgcagtagacggagtcggtccgatcatcgccgacgcgctcatcgagtggttcggcgtc
gactggcacgtggccatcgtcgaggcgtgggccgcggccggcgtgcagttcgcgacccct
gggcatccggggccgggtgcagcggccgtcgagggcggcgtgctgtcgggtgtcaccgtc
gtcgccaccggctcgctcgaggggttcacccgcgagggtgcgctcgaggccatcatcacc
gccggcggaaaggccgcatccagcgtgagcaagaagaccgacttcgtggccgcgggcccg
ggcgctggctcgaagctcaccaaggccgaggccctcggcctgcgcatcatcgacgcagaa
cagttcgccatcctggtcacccagggtccggattcgctgggcccggcccccgaggcggag
cccaccgatggagagacggacgccgggcagccgggggcctga
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