Acinetobacter gyllenbergii: FPL18_02735
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Entry
FPL18_02735 CDS
T08262
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
agyl
Acinetobacter gyllenbergii
Pathway
agyl03030
DNA replication
agyl03410
Base excision repair
agyl03420
Nucleotide excision repair
agyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FPL18_02735 (ligA)
03410 Base excision repair
FPL18_02735 (ligA)
03420 Nucleotide excision repair
FPL18_02735 (ligA)
03430 Mismatch repair
FPL18_02735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agyl03032
]
FPL18_02735 (ligA)
03400 DNA repair and recombination proteins [BR:
agyl03400
]
FPL18_02735 (ligA)
Enzymes [BR:
agyl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FPL18_02735 (ligA)
DNA replication proteins [BR:
agyl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FPL18_02735 (ligA)
DNA repair and recombination proteins [BR:
agyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FPL18_02735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FPL18_02735 (ligA)
MMR (mismatch excision repair)
DNA ligase
FPL18_02735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FPL18_02735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QHH92833
LinkDB
All DBs
Position
complement(588700..590727)
Genome browser
AA seq
675 aa
AA seq
DB search
MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTP
TNKVGGQALSKFESVTHAVPMLSLGNVFNQEDLFAFARRIDERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSSQHQAIPEFLEVRGEVLMP
KQGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPNHGLE
TMHDSLHWLTRFGFEIAERQFLCASIEEVQQRYEQIQQERPDLKVEIDGMVIKVDSLKQQ
QQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWAEFRPADAEMVHLPTNCPVCDSPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRDTLLTIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAADIEALKKTPDVGDITAEWIADFFQAPHNIEVLDRLMAAGIHWDAPTAPTRQPLN
GESWVVTGTLESMGRDEATQKLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLDIRV
LNEQEFLEFLKQYEA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaacacaactcagttattgagcaaatgcgtcagttgattcaactgattgcaaaacac
aatcatgcttactatgtgatggatcaaccctccatttctgatagtgaatatgaccattta
tttcatcagctgaaagccttagaacaacaatatccagaatgtattcaggccgataccccg
accaataaagtcggtggtcaagcgctatcaaaatttgaaagtgtgactcatgcagtgccg
atgctgtcattggggaatgtctttaatcaggaagacctattcgctttcgcccgtcgtatt
gacgagcgtttaccgaatcagaaagtccagtatgaggttgaactgaaactcgatggttta
gcgatttcactgtggtatgaaaatggtgtcttggttcgtggtgtaacacgtggtgatggt
gaaacaggcgaggatattacccagaatgttaaaaccattcggaatctgccgaaagtatta
tccagtcagcatcaagcgatcccagagtttcttgaggttcgtggtgaagtgttgatgcca
aagcaaggctttgaaaagctcaatgccgatcaagaagccaaaggtgacaagacctttgcc
aatccacgtaatgccgcagcaggaagcctgcgtcagcttgatccaaacattgctgcctcg
cgtccgttggcgttctatgcctatgggattgcgcaatgtcagcccaatcatggccttgaa
accatgcatgacagcctgcactggttaacccgatttggttttgaaattgcagaacgtcaa
ttcctgtgtgcttcgattgaagaagtgcaacaacgttatgaacagattcaacaagaacgt
ccagatcttaaagttgaaattgatggcatggtgattaaggtagatagccttaaacagcaa
caacaattaggtttcttgagtcgtgaaccacgttgggcaacagcttataaattccctgca
caggcagcactgaccaaagttgaaaatattgactggcaagtggggcgtactggaacactg
acacctgtcgcgcgtttaacacctgtgtttgttggtggggtgacggtgtctaatgtcacc
ttgcataatattggtgaaatccatcgtttagatgtgcgtgttggtgatactgtcagtgtc
tatcgtactggtgatgtgattccaaaagttgagaaggtttgggctgagttccgacctgcc
gatgcggagatggtgcatctcccgaccaattgtccagtctgtgattcacctgtggtgatg
ccagaaggtgaggccttggcacgttgctcaggtggtttgtattgtgcggcacaacgtatt
gaggccattcgtcactttgtttcacgtaaagcgctggatattgagggcttgggcgatcgt
tgggtcgagtcattgttacacctcgatctactcaaagatgtggctgatatttatcatttg
catgagcatcgtgacaccttattgaccatcgaaaaaatgggtgagaaatctgttcagaac
ttgattgatgcgattgaggcaagtaagaaaaccactttggcgcgttttatttatgccttg
gggattcgtggtgttggtgaaaccacagcgcgtatgctggccaatactttccagacgctt
gaggcactaaaagctgcagatattgaagcactcaagaaaacccctgatgtgggtgatatt
actgctgaatggattgccgactttttccaagcaccacataacatcgaagtgttggatcgt
ttaatggcagcaggcattcattgggatgcaccgactgcaccgacacgccagccattaaat
ggcgaaagttgggtggtgacaggaacgctggaaagcatgggacgtgatgaagcaacccag
aaacttcaagccttgggtgcgcgtgtcagtggtagtgtgtccagtaaaaccaaatgtgta
gttgcaggcgagaaagcgggtagtaagctggataaagcacagaagttagacattcgagta
ttgaatgagcaagagtttttagagttcttgaaacagtatgaagcatag
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