Anoxybacterium hadale: FRZ06_11505
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Entry
FRZ06_11505 CDS
T10883
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahad Anoxybacterium hadale
Pathway
ahad03030
DNA replication
ahad03410
Base excision repair
ahad03420
Nucleotide excision repair
ahad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRZ06_11505 (ligA)
03410 Base excision repair
FRZ06_11505 (ligA)
03420 Nucleotide excision repair
FRZ06_11505 (ligA)
03430 Mismatch repair
FRZ06_11505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahad03032
]
FRZ06_11505 (ligA)
03400 DNA repair and recombination proteins [BR:
ahad03400
]
FRZ06_11505 (ligA)
Enzymes [BR:
ahad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FRZ06_11505 (ligA)
DNA replication proteins [BR:
ahad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FRZ06_11505 (ligA)
DNA repair and recombination proteins [BR:
ahad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FRZ06_11505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRZ06_11505 (ligA)
MMR (mismatch excision repair)
DNA ligase
FRZ06_11505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FRZ06_11505 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT_2
RNA_ligase
PTCB-BRCT
DNA_ligase_A_M
HHH
HHH_3
DUF7340
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QOX63912
UniProt:
A0ACD1ABU9
LinkDB
All DBs
Position
complement(2600897..2602903)
Genome browser
AA seq
668 aa
AA seq
DB search
MDINQKLYELRNTINYHNEKYYDLSDPEISDTKYDLLMQELKQIEKEYPELVTFDSPTQR
VGGSAKREGGVKVQHKVPMLSLQDVFNKEDIYQFVNDMQSQFENPEFVVEQKIDGLSIAI
RYENGDLSVATTRGDGITEGDDVTENIKVIKDVKGKLKEKVPYLEVRGEVYMTSKAFEAV
NEQQELLGKQQFANPRNCASGTILQLDPNVARERNLSLFIFNIQDIEGMAFETHIQGYEF
LKQQGIKVIENYSLCRTADEVWDAIVKIGENRGSLDYEIDGAVVKLNNLSYRETVGSTSK
VPRWAVAYKYPPEEKETILLDIETSVGRTGRLTPTAVFKKISLCGTSVTRATLHNQDNID
NLDIRIGDTIVVFKSGEIIPKIKNVVIEKRTIESLLNNVSYKLPSACPVCGKKTVREEDT
ADLKCINPNCPAQLEKLIINFVGRQAMDIKGFGESFVVELIRKKYIKDIADIYSLFKYRD
ELVERSILGKEKNTDKLLENIDKSKANEAHKLLTGLGIPNIGKAAAKEILKHFKSIIELQ
YATVDELKQVSDIGDASAESIRSFFDDLNNQEIIRRLNEYGVNLNSSQNSNTDKRLSGKI
FVITGTLPTMDRNQATQLIESFGGKVTNSVSKKTDYVVAGENAGSKLTDAQNLNKQILSE
KELVDLLS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacataaaccaaaaactttatgaacttagaaatactattaactatcataatgaaaaa
tactatgatctcagcgatccggaaatttctgacactaaatatgatttattgatgcaagag
ctgaaacaaattgaaaaagaatatccagaattagtcacttttgattcacctactcaaagg
gttgggggtagtgcaaaaagagaaggtggagtaaaggtccaacataaagttcctatgctt
agtttgcaggatgtgtttaacaaagaggatatatatcaatttgttaatgatatgcaaagc
caatttgaaaatcctgaatttgtagtggagcagaaaattgatggactttcaattgccata
cgatatgaaaatggtgacttaagtgtggctactactcgaggtgacggtataactgaaggc
gatgatgttacagagaatattaaagttattaaggatgtcaaaggtaagctaaaagaaaaa
gtaccgtatctagaagtgcgtggtgaagtatacatgacctccaaggcatttgaggcagtc
aatgaacagcaggaacttctgggaaaacaacagtttgcgaacccacgaaactgtgcatca
ggaacaatacttcaacttgatccaaacgtggctagagaaagaaatctatcactttttata
tttaatattcaggacattgaaggaatggcctttgaaacgcatattcaggggtatgagttc
ttaaaacagcaaggcataaaagttattgaaaactattcattatgcagaacagcagacgag
gtttgggatgcaattgttaagattggtgagaatcgtggatctttggattatgaaattgat
ggagcggtagtcaaactaaataatttaagttatagagaaacagtcggaagcacgtcaaag
gtccctagatgggcggtagcatataaatatccgccagaagagaaagagacgatcctactt
gatattgagacatcagttggtaggaccggaaggcttacgccgaccgcggtctttaaaaaa
atatctttatgtggaacctctgtcacaagggccacacttcataatcaagacaatattgac
aacctggacattcgcataggcgatacaattgttgtttttaaatctggcgaaattatcccc
aagattaaaaacgttgtaattgaaaaacgaacaatagaatcattattaaataatgtgtct
tataagttaccgagtgcttgcccagtatgtggcaagaaaacggtacgtgaagaagacaca
gctgatttaaagtgcataaatcccaattgtcctgctcaacttgaaaagttgataataaat
tttgttggtagacaagcaatggatattaaaggatttggggaatcatttgtagttgagctc
ataagaaaaaaatatatcaaagacattgctgacatttattctttattcaaatacagagat
gaattagttgaacgttccattttgggaaaggaaaaaaatacagataaactcttagaaaat
attgataaatcaaaagccaatgaagcacataaattattgactggtcttggcatacctaat
attggtaaggctgcagcaaaagaaattttaaaacatttcaaatcaataatagagttgcag
tatgctacagttgatgaattgaagcaggtttcggatattggtgatgccagtgcagagtct
attcgcagtttttttgatgatctcaataaccaagaaattattcgcagacttaatgaatat
ggcgtcaatttgaattcatcccaaaatagtaatacagataaaaggctaagtggtaagata
tttgttatcacaggtactcttccaacaatggatcgcaaccaagcaacgcaattaattgaa
tcgttcggagggaaagtaacgaattcagtatctaaaaagacggactatgtcgtagctggg
gagaatgctggaagtaaattgactgatgcgcagaatttgaataaacaaattttgtcggag
aaagaactagtggatttactatcgtga
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