Alkalicoccus halolimnae: FTX54_005075
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Entry
FTX54_005075 CDS
T09800
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahal
Alkalicoccus halolimnae
Pathway
ahal03030
DNA replication
ahal03410
Base excision repair
ahal03420
Nucleotide excision repair
ahal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FTX54_005075 (ligA)
03410 Base excision repair
FTX54_005075 (ligA)
03420 Nucleotide excision repair
FTX54_005075 (ligA)
03430 Mismatch repair
FTX54_005075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahal03032
]
FTX54_005075 (ligA)
03400 DNA repair and recombination proteins [BR:
ahal03400
]
FTX54_005075 (ligA)
Enzymes [BR:
ahal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FTX54_005075 (ligA)
DNA replication proteins [BR:
ahal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FTX54_005075 (ligA)
DNA repair and recombination proteins [BR:
ahal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FTX54_005075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FTX54_005075 (ligA)
MMR (mismatch excision repair)
DNA ligase
FTX54_005075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FTX54_005075 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
zf-tcix
zf-NADH-PPase
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WWD80937
LinkDB
All DBs
Position
1148513..1150513
Genome browser
AA seq
666 aa
AA seq
DB search
MSQKRIDELTEQLKDYAYHYYVLDTPKISDPEYDQLLRELQELEKGFPEWKHEDSPTERV
GGEPLEQFRKVSHDVPMLSLSNAFNGEELLDFDRRVRDGLGYAPAYICELKIDGLAVTLK
YEKGRFVLGATRGDGETGEDITHNLRTIPSIPLKLQEPVTMEVRGEAFMPKRSFERLNKK
KTEREEAPFANPRNAAAGSLRQLDPKIAADRHLDIFIYSLGRMPEEELNSHHEALRYVKK
LGFKTNKETKAFDTIEEVITYCEGWLEKRTDLPYEIDGIVVKVDNLSDQEKLGFTAKSPR
WATAYKFPAEEVVTRLKAIELNVGRTGVVTPTALLEPVSVAGSTVQRASLHNEDLIREQD
VKIGDKVVVKKAGDVIPKVVRVLVDERTGEEKDFYMPEKCPECGSGLVRIEGEVALRCVN
PKCPAQIREGLIHFVSRNAMNIDGLGERVITQLFDHHLVADVADIYRLEKEELLKLERMG
EKSVDNLLKAIEATKSNSLEKLLFGLGIRFVGSKAAKTLAQHFETMEALERADIEDLTAV
DEIGEKMADAVVTYFSHEEVIRLLEELKVLGINMTYTGPKAVSPENSDSLFAGRTMVLTG
SMGEMSRAEAKKEIEKRGGKVTSSVTKNTDILVAGEKAGSKLKKAEELGIEVWDEALFLE
QLKQPV
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacagaaaagaatagatgagctgactgaacagctgaaagactatgcgtatcattac
tacgtattggataccccaaagatctccgacccggaatatgatcagcttctgcgggaactg
caggagctggagaaggggtttccggagtggaaacacgaagattctccaactgaacgcgtt
ggaggcgaaccgctcgaacagttcaggaaagtcagtcatgacgtaccgatgctttctctg
tccaatgcttttaatggagaggaactgctcgatttcgatagaagagtgagggatggactg
gggtatgcccctgcttatatatgtgaacttaaaattgacggccttgccgtgacgctgaaa
tatgaaaaaggcaggttcgttctcggtgctacgcgcggggatggagaaacgggagaagat
attacccataacctgcggacgattccttcaattcctttaaagctccaggagccggtgacg
atggaagtgcgcggagaagcttttatgccaaagcgttcctttgagaggctgaacaaaaag
aaaacagagcgggaagaggctccatttgcaaatccccgaaatgctgcagcgggatcgctc
cggcagcttgatcctaaaattgctgctgacagacatctggacattttcatttattcactc
ggcagaatgccggaggaggagctgaattctcatcacgaagccctccgctatgtgaaaaaa
ctcggatttaaaacaaataaagaaacgaaggcttttgacacaatcgaagaggtaatcacc
tactgcgaaggatggctggaaaaacgaacagacctcccttatgaaattgacggaatcgta
gtaaaggtggacaatctcagcgatcaggaaaagcttggatttacagcaaaaagcccccgg
tgggcaactgcgtataagttcccggcggaagaagttgtcacccgccttaaagctattgaa
ctgaatgtcggcagaacaggtgtagtgactccgactgcgcttcttgaaccggtaagtgtc
gcaggttcgacagttcagcgtgcctctcttcataacgaggaccttatccgggaacaggat
gtaaagatcggggataaggttgtcgtgaaaaaggctggcgacgttattcctaaagtcgtt
cgagtgcttgtcgatgagcgtacgggtgaagaaaaagatttctacatgcccgaaaaatgt
ccggaatgcggaagcggccttgtccgtattgaaggggaagttgcgctccgctgcgttaat
ccaaagtgccctgctcaaatcagagaaggactgattcactttgtttcccggaatgccatg
aatattgacggtctcggcgaaagggtgataacccagctttttgaccaccatcttgtcgcg
gacgtagctgatatttaccggctggaaaaagaagagcttctgaagctggaacgaatgggg
gaaaaatccgtagacaatcttctgaaagccattgaagcgacaaagtctaattcgcttgaa
aagctgcttttcggtcttggtatacgcttcgtaggatcaaaagcagccaaaacccttgct
cagcacttcgaaacgatggaagcccttgaacgtgcggatatagaggacttgactgcagta
gatgaaatcggagaaaagatggcggacgctgtagttacgtacttttcacacgaagaagtg
atccgcctgcttgaagagctgaaagtattaggcataaatatgacgtataccggacctaaa
gcagtttctcctgaaaacagtgactctttatttgccggaagaacgatggttttaacagga
tcaatgggtgaaatgtcccgggctgaggcaaaaaaagaaatagaaaagcgcggcggcaaa
gttacgagcagtgtaactaaaaacacagacattcttgtagcaggagaaaaggcaggttcc
aaactgaaaaaagctgaagaactgggtatcgaagtctgggatgaagcgctctttttggaa
caattaaagcagcctgtataa
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