Aristaeella hokkaidonensis: JYE49_04185
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Entry
JYE49_04185 CDS
T09243
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahc
Aristaeella hokkaidonensis
Pathway
ahc03030
DNA replication
ahc03410
Base excision repair
ahc03420
Nucleotide excision repair
ahc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYE49_04185 (ligA)
03410 Base excision repair
JYE49_04185 (ligA)
03420 Nucleotide excision repair
JYE49_04185 (ligA)
03430 Mismatch repair
JYE49_04185 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahc03032
]
JYE49_04185 (ligA)
03400 DNA repair and recombination proteins [BR:
ahc03400
]
JYE49_04185 (ligA)
Enzymes [BR:
ahc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JYE49_04185 (ligA)
DNA replication proteins [BR:
ahc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JYE49_04185 (ligA)
DNA repair and recombination proteins [BR:
ahc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JYE49_04185 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYE49_04185 (ligA)
MMR (mismatch excision repair)
DNA ligase
JYE49_04185 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYE49_04185 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
HHH
PTCB-BRCT
DNA_pol_lambd_f
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
BRCT_2
ADK_lid
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QUC67905
LinkDB
All DBs
Position
905310..907274
Genome browser
AA seq
654 aa
AA seq
DB search
MSEARERMEQLVRRLNETSYAYYVLDNPIISDMQWDQMYDELKKLESETGIVLPDSPTKK
VGGEPLKSFEEHRHITRLWSLDKVQSLEELEAWIQRTEKLAEAENLQYYLEYKFDGLTLN
LTYENGNLVQAATRGNGITGEAILPQARTIHSVPKAIPYKGLLEVQGECIMRLSTLEKYN
KTAKEPLKNARNAAAGALRNLDPAVTASRHLDAFFYQIGTIENPPYDSQPGMLDFLRQNG
FQVSPYLGSSKGRQALEECILEVEKRRSSLDWLIDGVVIKVGDYTLRERMGFTEKFPRWA
VAYKFKAEECVTKLLDVTWELGRTGKLTPLAHVEPVDFYGVTVKKATLNNLGDIQRKDVA
IGCDVWIRRSNDVIPEIMGRAGDPKEDEKPIEKPQICPACGSPLIERGAHLFCMNRESCR
PQAVARLAHFAGREAMDIDGFSEKTAGQLYDQMGVRQPADLYTLTPMDFLMLEGFKEKKA
GNLSDALEKSKHCDLDAFLFALGIPNVGRKTARDLAQHFGSLEKLKAADEASLTAIPDIG
GIVAGSVIEYFSFPENNQMIERLFAAGVHPGEMHSAAEGVFSSMSIVVTGTLPTLSRKQA
EDLIRSRGGNASGSVSKKTAFVVVGEDAGSKLTKAQSLGIETIDEAELLRRANS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggcacgggaacggatggagcagctggtcaggcggctgaatgagacatcctat
gcctattatgtgctggataatcccatcatttctgacatgcaatgggatcagatgtatgat
gaactgaaaaagcttgagagcgaaaccggcattgtgctgcctgattccccgacaaaaaaa
gtcggcggagagccactgaaaagctttgaggaacaccgccatatcacaaggctgtggtcc
ctggacaaggtgcagagccttgaagaactggaagcctggattcagcggacggaaaaactg
gcagaggctgaaaacctccagtactatctggaatacaagtttgacggactgacgctaaac
ctgacgtatgaaaacggtaatctggttcaggctgccacccgcggaaacggtattacgggc
gaggcgattctgccgcaggcacgcacaattcattcggttcccaaagccattccatacaag
gggctgctggaagtacagggtgaatgcatcatgcggctgagcaccctggaaaagtataat
aaaacagcgaaggaaccgcttaaaaacgcgcggaatgcagctgcaggagcgttgcggaat
ctggatccggcggttacggcttcccggcatctggacgcatttttctatcagatcgggacc
attgaaaacccgccctatgacagccagcccggtatgctggatttcctgcggcagaacggt
tttcaggtcagcccatacctgggaagcagcaaaggacgccaggctctggaagaatgtatt
ctggaggtggaaaaacgacgcagcagtctcgactggctgattgacggcgttgtgatcaag
gtcggtgattataccctgcgggaacggatgggatttacggaaaaattcccgcggtgggcg
gttgcatataaattcaaggcagaggaatgcgtcacaaaacttcttgacgtcacctgggaa
cttggaagaaccgggaaactgaccccgcttgctcatgtggaacctgtggatttctacggg
gtgacagtgaaaaaggccacgctgaataatctgggagatatacagcgaaaagacgtggcg
atcggctgcgatgtgtggatccggcgaagcaacgatgttatccctgaaattatgggacgg
gccggagatccgaaagaggatgaaaaaccgattgaaaagccgcagatctgtccggcgtgc
ggaagtcctctgattgaacggggagcacatctgttctgcatgaaccgtgaaagctgccgg
ccccaggctgtggcacgactggctcattttgccgggcgcgaagcgatggatattgacggc
ttcagtgaaaagacggccgggcagctgtatgaccagatgggtgtcagacagccggcagac
ctgtatacactgacgcccatggacttcctgatgctggaaggctttaaggaaaaaaaggcc
ggaaacctgtcggacgccctggaaaagagtaaacactgtgatctggatgccttcctgttt
gcactgggcattccgaatgtgggcaggaaaacggccagggatctggcccagcactttgga
tcgctggagaaactgaaagcagctgatgaagcgtcgctgacggccattccggatatcggc
gggattgtggcgggcagtgtaattgagtatttcagtttcccggaaaacaatcagatgatt
gaaagactgtttgctgccggtgttcatcccggtgaaatgcattccgcggcggaaggtgtt
ttttccagcatgagtattgtggtgacaggtacgctgccaacactcagccggaagcaggcg
gaagacctgatccgcagccggggcggcaacgcttccggatccgtcagtaaaaaaaccgca
ttcgtggtagtcggcgaagacgcaggcagcaagctgaccaaggcgcaaagtcttggcatc
gagaccattgatgaggcggaattgctcaggagagctaattcataa
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