Actinoalloteichus hoggarensis: AHOG_23955
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Entry
AHOG_23955 CDS
T04975
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahg
Actinoalloteichus hoggarensis
Pathway
ahg03030
DNA replication
ahg03410
Base excision repair
ahg03420
Nucleotide excision repair
ahg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AHOG_23955 (ligA)
03410 Base excision repair
AHOG_23955 (ligA)
03420 Nucleotide excision repair
AHOG_23955 (ligA)
03430 Mismatch repair
AHOG_23955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahg03032
]
AHOG_23955 (ligA)
03400 DNA repair and recombination proteins [BR:
ahg03400
]
AHOG_23955 (ligA)
Enzymes [BR:
ahg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AHOG_23955 (ligA)
DNA replication proteins [BR:
ahg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AHOG_23955 (ligA)
DNA repair and recombination proteins [BR:
ahg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AHOG_23955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AHOG_23955 (ligA)
MMR (mismatch excision repair)
DNA ligase
AHOG_23955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AHOG_23955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
Zn_ribbon_TFIIB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ASO22397
UniProt:
A0A221WAS8
LinkDB
All DBs
Position
complement(5657402..5659840)
Genome browser
AA seq
812 aa
AA seq
DB search
MTSESAEETAASTEAQSVEDVPAQARERHDRLAEEVTGHQFRYYVRDAPTISDGEFDRLL
GELAELERRYPGLATPESPTQRVGGTFSTEFNAVDHLERMLSLDNAFEEEELAAWVDRVE
REVGPDAHYLSELKIDGLAINLLYENGRLIRALTRGDGRTGEDVTLNIRTMDDVPERLHG
TEEFPIPELVEVRGEVFFVLEEFTELNAGLVASGRAPFANPRNAAAGSLRQKDPRVTASR
PLRLICHGLGRRTGFQAERQSEAYAALRAWGLPVSSHTKVLGSLAELRRHLAYWGEHRHD
AEHEIDGVVFKVDEVPLQRRLGTTSRAPRWAIAYKYPPEEATTELRDIQVNVGRTGRVTP
FAVMEPVKVAGSTVAMATLHNGDEVRRKGVLIGDRVVIRKAGDVIPEVLGPVVDARDGTE
REFVMPTHCPECGTELRREKESDVDIRCPNARSCPAQLRERLFHLAGRGAFDIEVLGYEA
ASALLTSEVITDEGDVFELTEESLLQAELFRTKAGELSANGRKLIRNLAAAKEQPLWRVL
VALSIRHVGPTAARALAGEFGSLERIDAADEAELAAADGVGPTIATAVREWFAVDWHREV
VDKWRRAGVRMVDEQYDSIPRTLEGLSIVVTGSLEGFSRDEAKEAVMARGGRSAGSVSKK
TAFVVVGEAPGSKYDKAMQLGVPVLDEAGFRVLLADGPEAAAPLAERPAEAEPEPESGAG
AGTETGTGTGAGPGTGAADGAGADGSADGEPAPPKTKRAGEGRRSRAKRTGTAEGAAEDT
PEESSAADSGTTEAPAAGDMSGSAAHDEEDSA
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtgaccagcgaatcagccgaggagacggccgcctcgaccgaggctcagagcgtcgaggac
gtgcccgcgcaggcgagggaacgacatgatcgcctcgccgaggaggtcacgggacatcag
ttccgctactacgtgcgtgacgcgcccacgatctccgacggcgagttcgaccgcctcctc
ggcgagctcgccgagctggagcggcggtatccgggcctcgcgaccccggagtccccgacc
cagcgggtgggtggcaccttctccaccgagttcaacgccgtcgatcatctggagcgcatg
ctcagcctggacaacgccttcgaggaggaggagttggccgcctgggtcgaccgggtggag
cgtgaggtcggccccgacgcccactacctcagcgaactcaagatcgacggactggccatc
aacctgctctacgagaacggcaggctgatcagggcgttgaccaggggagacggccgcacc
ggcgaagacgtcaccctgaacatccgcaccatggacgacgtgccggagcgcctgcacggc
accgaggagttcccgattcccgaactcgtcgaggtgcgtggcgaggtgttcttcgtgctg
gaggagttcaccgagctgaacgcgggcctggtcgcctcgggacgcgcccccttcgccaat
ccgcgcaacgccgcggcgggctcgctgcgacagaaggacccccgggtgacggcctcccgt
ccgctacgactcatctgccacgggctcggcaggcgcaccggcttccaggcggagcgccag
tccgaggcctacgccgcgttgcgtgcctggggactgcccgtctccagccacacgaaggtc
ctcggctcactcgccgagctgcgaagacatctcgcctactggggcgagcaccggcacgac
gcggagcacgagatcgacggcgtcgtcttcaaggtcgacgaggtgcccctgcaacgcaga
ctgggcaccacctcgcgggcgccgcgctgggcgatcgcctacaagtacccgccggaggag
gccaccaccgagctgcgcgacatccaggtcaacgtgggccgtaccggtcgggtgaccccg
ttcgcggtgatggagccggtgaaggtggcgggctccaccgtggcgatggccaccctgcac
aacggcgacgaggtccgacgcaagggcgtgctcatcggcgaccgggtggtgatccgcaag
gcgggcgacgtcatccccgaggtgctcgggccggtggtggacgccagggacggcaccgaa
cgcgagttcgtgatgcccacgcactgcccggagtgcggcaccgagctgcgtcgggagaag
gagagcgacgtcgacatccgctgtccgaacgcgcggtcctgccccgcgcagcttcgggag
cggctgttccacctggcgggtcggggcgcgttcgacatcgaggtcctcggctacgaggcc
gcgtcggcgctgttgacctcggaggtgatcaccgacgagggcgacgtcttcgagctgacc
gaggagagcctgctgcaggcggagctgttccgcaccaaggcgggcgagctgtcggccaac
ggccgcaagctgatccgcaacctggccgccgcgaaggaacagccgctgtggcgggtgctc
gtggccctgtccatccgccacgtcgggccgacggcggcgcgcgcgctggccggtgagttc
ggctccctggaacggatcgacgccgcggacgaggccgagctggcggcggccgacggcgtc
ggaccgaccatcgcgacggccgtgcgcgagtggttcgccgtcgactggcatcgtgaggtg
gtcgacaagtggcgccgcgcgggcgtccgcatggtggacgagcagtacgactcgattcct
cggacgctggagggcctgtccatcgtcgtgacgggctcgttggagggcttctcccgcgac
gaggccaaggaggccgtgatggcgcgcggcggccgatccgcgggctcggtctccaagaag
acggccttcgtggtcgtcggcgaggcccccggctcgaagtacgacaaggcgatgcagctg
ggcgttcccgtcttggacgaggcgggcttccgggtgctgctggcggacggccctgaggcg
gcggcgccgctggccgagcggcccgccgaggcggagcccgagcccgagtccggggccggg
gctgggaccgagaccgggactgggactggggccgggcctgggactggggcggccgacgga
gccggtgccgacgggtccgcggacggcgagccggcgcccccgaagacgaagcgggcgggc
gagggcagacggtcgcgagcgaagcggacgggcacggccgagggcgctgccgaggacacg
cccgaggagagctccgccgccgactctggtaccaccgaggcaccggcggccggggacatg
tcggggtccgccgcccacgacgaggaggactcggcatga
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