Aeromonas hydrophila AL06-06: RY45_06570
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Entry
RY45_06570 CDS
T03748
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahh
Aeromonas hydrophila AL06-06
Pathway
ahh03030
DNA replication
ahh03410
Base excision repair
ahh03420
Nucleotide excision repair
ahh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RY45_06570 (ligA)
03410 Base excision repair
RY45_06570 (ligA)
03420 Nucleotide excision repair
RY45_06570 (ligA)
03430 Mismatch repair
RY45_06570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahh03032
]
RY45_06570 (ligA)
03400 DNA repair and recombination proteins [BR:
ahh03400
]
RY45_06570 (ligA)
Enzymes [BR:
ahh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RY45_06570 (ligA)
DNA replication proteins [BR:
ahh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RY45_06570 (ligA)
DNA repair and recombination proteins [BR:
ahh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RY45_06570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RY45_06570 (ligA)
MMR (mismatch excision repair)
DNA ligase
RY45_06570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RY45_06570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AJQ53764
LinkDB
All DBs
Position
1395994..1398000
Genome browser
AA seq
668 aa
AA seq
DB search
MSDILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIALEAEHPELKTPASPSV
RVGGQPLTAFKQVRHEIPMLSLDNVFSGEELQAFEQRMRDRLKREVSFTFCCEPKLDGLA
VSLLYVDGQLVQAATRGDGTTGEEITENVRTIKAIPLSLRGEGWPARLEVRGEVFMPKAG
FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLGGSHFG
RLNQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGALPYEIDGVVYKVDAIPLQEELG
FVARAPRWATAHKFPAQEEMTELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFPTECPVCGSAVERLEGE
AVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQ
LAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
SVEQLLEVADVGDIVAKHVYYFLRQPHNIEVLEALLAAGIHWPAIEKKEASEQPFAGKTF
VLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLVKAQELGITVWSEE
ELQQALQG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatatcctctcccgccaccgtcaactgtgtgagctgctgatcgagtacggtcat
cagtactatgtgctggacaaccccacggtgccagacgccgaatacgatcggctgatgcgc
gagctgatcgcgctggaagccgagcatcccgagctgaagacgccggcctcgccgagcgta
cgggtgggtggccagccgctgaccgccttcaaacaggtgcgccacgagatccccatgctg
agtctggacaacgtgttcagcggcgaggagctgcaggcgttcgagcagcggatgcgcgat
cgcctcaagcgggaggtgagctttaccttctgctgcgagcccaagctggacgggctggcg
gtgagcctgctctatgtggatggccagctggtgcaggctgccacccggggcgatggcacc
acgggtgaggagatcaccgagaacgtgcgcaccatcaaggccattcccttgtccctgcgc
ggcgagggctggccggcccggctggaggtgcgtggcgaggtgttcatgcccaaggcgggg
ttcgaggcgatgaacgccaaggcgctggccgccggcgagaaggtgttcgtcaacccgcgc
aatgccgccgccggcagcctgcgtcagctcgattcgcgcatcaccgccagccgcccgctg
gccttctacgcctatggcgtgggggtgggcggcgagcagctcggtggctctcactttggt
cgcctcaatcagctcaaagagtgggggctgccgctcagccctgaagtgaagctcaaagag
ggggccgctggttgccaggcgttccacgacgacatcctggcgcgccgcggcgcgctcccc
tacgagatcgacggcgtggtctacaaggtggatgccatccctctgcaggaggagctcggc
tttgtggcccgcgccccgcgctgggccaccgcccacaagttcccggcccaggaagagatg
acggagcttgagaacgtcgagttccaggtcggccgtaccggcgccgtgaccccggtggcc
aagctcaaaccggtgttcgtcggcggcgtcaccgtctccaacgccaccctgcacaatgcc
gacgagattgagcgccttggcgtgatgatcggcgacaccgtgatcgtgcgccgggccggg
gacgtgatcccgcagatcgtggcggtggtggaggcgcagcgcccggcggatgcccgcgcg
atcctgttcccgaccgagtgcccggtgtgtggctcggcggtggagcggctggagggagag
gcggtgacccgctgttccggcggcctgttctgcgaggcgcagcgcaaggaggcgatcaag
cactttgccgcccgccgtgccatggacgtggatggccttggcgacaagatagtggagcag
ctggtggacaaggggctggtgaagaccccggcggacttgttcagcctcaacgccattcag
ctggccgggctcgagcggatggggcaaaagtcggccctcaatctggtggcggccatcgat
gcggcccgcagcaccacgctgccccgcttcctgtttgcgctggggatccgcgaagtgggg
gaggcgactgccttgaacctcgccaaccacttcctgactctggacgccctgcgcgccgcc
tcggtggagcagttgctggaagtggccgacgtgggggacatagtggccaagcatgtctac
tacttcctgcgccagcctcacaacatcgaggtgctggaggccctgctggccgccggcatc
cactggccggccatcgagaagaaggaggcaagcgagcagccctttgccggcaagaccttt
gtgctgaccggcaccctcaccacgctgtcgcgcaacgacgccaaggcggcgctgcaggcg
ctgggggccaaggtggcgggctcggtgtcggccaagaccgatgtgctggtggcgggggag
gcggcaggctccaagctggtcaaggcccaggagctcggcatcaccgtctggagtgaagaa
gagctgcaacaggcgttgcagggctga
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integrated database retrieval system
