Acholeplasma hippikon: NCTC10172_01148
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Entry
NCTC10172_01148 CDS
T06645
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahk
Acholeplasma hippikon
Pathway
ahk03030
DNA replication
ahk03410
Base excision repair
ahk03420
Nucleotide excision repair
ahk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10172_01148 (ligA)
03410 Base excision repair
NCTC10172_01148 (ligA)
03420 Nucleotide excision repair
NCTC10172_01148 (ligA)
03430 Mismatch repair
NCTC10172_01148 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahk03032
]
NCTC10172_01148 (ligA)
03400 DNA repair and recombination proteins [BR:
ahk03400
]
NCTC10172_01148 (ligA)
Enzymes [BR:
ahk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10172_01148 (ligA)
DNA replication proteins [BR:
ahk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10172_01148 (ligA)
DNA repair and recombination proteins [BR:
ahk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10172_01148 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10172_01148 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC10172_01148 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10172_01148 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
VEU83098
UniProt:
A0A449BKV7
LinkDB
All DBs
Position
1:1147881..1149860
Genome browser
AA seq
659 aa
AA seq
DB search
MIIKDRILELRKMINEANIAYHTEDKPLISDFEYDMMLKELNELEEQYPEYDDPNSPTKK
IGGGILDEFQKHTHSTPMMSLGNVFNEEELRGFYNKVNKVVDNFSIVSELKIDGLAVSLI
YEQGKFIKAATRGNGLVGEDVTQNVRTIKSLPLTLKEPIDIEVRGEIYMSHASFKKANVE
RLEQGLDLFANPRNAAAGTIRQLDSKVVAKRDLSIFLYAIVNAKQYVQTQEELLKYLKHL
GFPVNPYFKVAKNADELISYISEYDDLRKTLPYDTDGIVVKVNELSLHEMIGYTAKSPKF
ATAYKFEAEKQETVIKGIAFQVGRTGVITPVAELEPVLISGSMVSRATLHNEDYVLGKDI
RINDYVLVHKAGEIIPEVLSVNLDKRTNQEPFKMIDTCPVCGSHLERKSGEADYYCMNEN
CTGKNVFSLIHFASRVAMDIESLGEKVVLLLHDLTYLQTIPDIYKLHLYKDELMELPGFG
KKKVENLLDAIEKSKTQTFDRFIFGLGIKHVGAKVAKLLLKHFPTIDDLMNASFEALIDI
HEIGEQIASSVVQYFSNEKNIEMINELRSFGINMAYQVQTTKDHEFSGKTFVLTGTLESF
SRDQASSIIEKLGGKVSSSVSSKTNYLLAGSDAGSKLRKAQDLGVYVMSEEEFKEKTNE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgataattaaagatagaattttagaactaagaaaaatgataaatgaagcaaatattgca
tatcacactgaggataaacctttaatcagtgattttgaatatgacatgatgttaaaggaa
ttaaatgaattagaagaacaatatcctgagtatgatgatcctaattcaccaactaaaaaa
attggtggtggtatcttagatgaatttcaaaaacatacacactcaacaccaatgatgtct
ttaggcaatgtctttaatgaagaagagttaagaggattctacaacaaagttaataaagtt
gtagataatttttctatcgtttctgaattaaagattgatggtctagcagtatctttaatt
tacgaacaaggtaaatttattaaagctgcaacacgcgggaatggattagtcggagaagat
gtgacacaaaacgttagaacgattaaatcattacctttaactttaaaagaaccaattgat
attgaagtgcgtggagaaatctatatgtcacacgcatcatttaaaaaagcaaatgtagaa
cgtctagaacaaggattggatttatttgcaaatcccagaaatgctgcagcaggtacgatt
cgtcaattagatagtaaagttgttgcaaaacgcgatttatctattttcctatatgcaatt
gttaatgcaaaacaatatgttcagactcaagaagaattattaaagtatttaaaacactta
ggtttcccggtgaatccatattttaaagtcgctaaaaacgctgatgaattaatttcatac
attagtgaatatgatgatttaagaaaaactttaccttatgataccgatgggattgttgta
aaggttaatgaacttagtttacatgaaatgattgggtatactgcaaaatcacctaaattt
gcaaccgcttataaatttgaagcagaaaaacaggaaacagtaattaaaggtattgccttt
caagtaggtagaactggagttattacaccggttgctgagttagaaccagttttaatttct
ggttcaatggtttctcgagcaacactacataatgaagattatgttttaggtaaagatatt
agaattaatgactatgtattagttcataaggcaggagagattattcctgaagtactaagt
gttaatttagataaaagaacaaatcaagaaccattcaaaatgattgatacatgtccagtt
tgtggaagtcatttagagagaaaatcaggtgaagcagattattactgtatgaatgaaaat
tgtacaggtaaaaatgtattttcacttattcattttgcaagtagagttgctatggatatt
gaatcacttggtgaaaaagttgttttattactccatgatttaacttatctacaaaccatt
ccggatatctataaattgcatttatataaagatgagttaatggaattgcctggatttggt
aagaaaaaagtagaaaacttattagatgcaattgaaaaatcaaagacacaaacatttgat
cgcttcatctttggtttaggtattaaacatgtgggtgcaaaagtggctaagctcttatta
aagcatttcccaacaattgatgatttaatgaatgcatcatttgaagcattaattgatatt
catgaaattggtgaacaaattgcaagctcagttgttcaatattttagtaatgaaaagaac
attgaaatgattaatgaattaagatcatttggaatcaatatggcatatcaagtacaaacc
actaaagatcatgaattcagtggaaagacttttgttctaacaggaacattagaaagtttt
tcaagagaccaagcatcatcaatcattgagaaacttggaggaaaagtatcttcatcagta
tcaagtaagacaaactatctcttagcaggtagtgatgctgggtcaaaacttagaaaagca
caagaccttggtgtttacgttatgagtgaagaagaatttaaggaaaagaccaatgaatag
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