Acinetobacter haemolyticus: AHTJS_12315
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Entry
AHTJS_12315 CDS
T04618
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahl
Acinetobacter haemolyticus
Pathway
ahl03030
DNA replication
ahl03410
Base excision repair
ahl03420
Nucleotide excision repair
ahl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AHTJS_12315 (ligA)
03410 Base excision repair
AHTJS_12315 (ligA)
03420 Nucleotide excision repair
AHTJS_12315 (ligA)
03430 Mismatch repair
AHTJS_12315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahl03032
]
AHTJS_12315 (ligA)
03400 DNA repair and recombination proteins [BR:
ahl03400
]
AHTJS_12315 (ligA)
Enzymes [BR:
ahl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AHTJS_12315 (ligA)
DNA replication proteins [BR:
ahl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AHTJS_12315 (ligA)
DNA repair and recombination proteins [BR:
ahl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AHTJS_12315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AHTJS_12315 (ligA)
MMR (mismatch excision repair)
DNA ligase
AHTJS_12315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AHTJS_12315 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
APR71066
LinkDB
All DBs
Position
complement(2502068..2504092)
Genome browser
AA seq
674 aa
AA seq
DB search
MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTP
TNKVGGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRIDERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVRGEVLMP
KQGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPHHGLA
TMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAEIVHLPTNCPVCDSPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRATLLTIEKMGEKSVQNLIDAIEASKKTTLARFIYGLGIRGVGETTARMLANTFQTL
DALKAADVEALKKTPDVGDITAEWIADFFQAPHNIEVLDRLMAAGIHWDAPTAPTRQPLN
GESWVVTGTLESMGRDEATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRV
MNEQEFLDFLAQYD
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaacataattcagtgattgagcaaatgcgtcaattgattcagctcattgcaaaacac
aatcatgcttactatgtgatggatcaaccttcaatttcagatagtgaatatgaccattta
tttcatcagcttaaagcattagaacaacaataccctgaatgcatccaagcagatacccca
accaataaagtgggtggtcaagcactgtcgaaatttgaaagtgtgacccatgtagtgccg
atgttgtcattgggcaatgtctttaatcaagaagagttatttgcttttgcccgtcgcata
gatgaacgtttacccaatcagaaagtgcaatatgaagtcgagctgaaactagatggttta
gcgatctcactttggtatgaaaatggtgttttggtacgtggcgtgacgcgtggcgatggt
gaaactggtgaagatattactcagaacgtgaaaaccattcgcaatttgccgaaggttcta
tcaggtcaatctcaagctataccacagcttttagaagtgcgtggtgaagtattaatgcca
aaacaagggtttgaaaagcttaatgctgatcaagcggccaaaggtgaaaaaacttttgcg
aacccccgaaacgctgcagctggtagtttaagacaacttgatcctaatatcgcagcatca
cgtcctttagcattctatgcttatgggatcgcacagtgtcaaccacatcatggtttagca
acgatgcatgacagtttgcattggcttaccaaatttggttttgaaatcgccgaaagacaa
tatctttgcgagtcgattgaagaagttcaacaacgttatgagcagattcaacaagaacgc
ccagatttaaatgttgaaattgatggcatggtggtaaaggtcgatgacctgaaacagcaa
caacaattgggcttcttaagtcgtgaaccacgctgggcaactgcttataaatttccagca
caagcagctttaaccaaagtcgaaaatatagattggcaagtcggacgtaccggaacactg
acaccagttgctcgtcttacacctgtatttgtcggtggtgtaactgtttcgaatgtgact
ttacacaatatcggggaaattcatcgtttagatgtacgtgttggtgacacggtgagtgta
tatcgtactggtgatgtgattccaaaggttgagaaagtttgggctgagttccgacctact
gatgcggagattgttcatctccctacgaattgtccagtatgtgattcaccagtggtcatg
ccagaaggcgaagctttagcacgttgttcaggtggcttgtattgtgctgcgcaacgtatt
gaagccattcgacactttgtttcacgtaaagctcttgatatcgagggtttgggtgatcgc
tgggtggagtcacttttacatttggatttactgaaagacgttgcagatatttatcacctg
catgaacatcgggcgacattactgaccattgaaaaaatgggcgagaaatctgttcagaac
ttgattgatgccattgaagccagtaaaaaaaccacattagcgcgttttatttatggtttg
ggtattcgtggtgttggtgaaacgacagcacgtatgcttgcaaatacgtttcaaaccttg
gatgccttgaaagcagctgatgttgaagcacttaagaaaacgcctgatgtcggtgatatt
accgctgaatggatcgctgactttttccaagcaccgcataacatcgaagtgttagatcgt
ttaatggcagctggcatccattgggatgcaccgacagcaccgactcgtcagccactcaat
ggtgagagttgggtcgtcacaggaacattggaaagtatggggcgtgatgaggcaacacaa
cgtcttcaagcgctgggtgctcgagtaagtggcagtgtttccagtaaaaccaaatgtgta
gttgcgggtgagaaagcgggcagtaaattagaaaaagcgcaaaaattagaaattcgagta
atgaatgagcaagaatttttagactttttggcgcagtatgattga
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integrated database retrieval system
