Atlantibacter hermannii: NCTC12129_04924
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Entry
NCTC12129_04924 CDS
T05790
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahn
Atlantibacter hermannii
Pathway
ahn03030
DNA replication
ahn03410
Base excision repair
ahn03420
Nucleotide excision repair
ahn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12129_04924 (ligB)
03410 Base excision repair
NCTC12129_04924 (ligB)
03420 Nucleotide excision repair
NCTC12129_04924 (ligB)
03430 Mismatch repair
NCTC12129_04924 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahn03032
]
NCTC12129_04924 (ligB)
03400 DNA repair and recombination proteins [BR:
ahn03400
]
NCTC12129_04924 (ligB)
Enzymes [BR:
ahn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC12129_04924 (ligB)
DNA replication proteins [BR:
ahn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12129_04924 (ligB)
DNA repair and recombination proteins [BR:
ahn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC12129_04924 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12129_04924 (ligB)
MMR (mismatch excision repair)
DNA ligase
NCTC12129_04924 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC12129_04924 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
VDZ75684
LinkDB
All DBs
Position
1:complement(4453771..4455471)
Genome browser
AA seq
566 aa
AA seq
DB search
MKGCTLTLLLMLFSAAAHSECPAWPMERAQQEINALARQIEKWDDAYWEHGESRVSDETY
DTLRATLLQWERCFSASAPPHKPIVAKSGTIPHPVAHTGVRKMPDKQTLQNWMAVRGGGL
WVQPKVDGVAVTLVYSKGELVQAISRGDGIKGHSWFDKARAIPAIPKTTQGILADSVLQG
EIFLRQPAHVQQRSGGINARAKVAGAMLRRDATSILNELDIFIWAWPGGPTSFPERLRLL
AEGGFPLVQQWSKPVTSVEEVEHWRAQWFKSPLPFVTDGVVIRQVEESAARSWQPGQGDW
AVAWKYEPEAQTTEVRDIHFSVGRSGKLSAVALLAPVKIDDKEIKRVNIGSVRRWQAWDI
APGDHVLVSLAGRGIPKIMSVVWRGIERVKPQPPEPRFNTLSCFYYSPDCHEQFFSRLAW
MSSPSVLAMSGLNRAGWQQLHDTFRFEHIYSWLGLNQQQLQNAPGFSPGRALEMWHRFNL
ARQQPLRLWLKSLGLPLPNAALNRLPDKEWRTVVDRDELNWRQLSGVGPERARKLVQFTR
HPQVSMLASWLGSMGISGFSVQRENR
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaagggatgcacattaacactgttactgatgttgttttcggcggctgcccatagcgaa
tgcccggcatggccaatggaacgcgcgcagcaagagataaacgcgctggcgcggcagata
gaaaagtgggacgacgcttactgggaacacggagaaagccgggtaagcgatgaaacgtac
gacacgctacgcgccacgctgctgcagtgggagcgctgtttttcagcgagcgcgccgccg
cacaagcccatcgtggcaaaaagcggcactattccgcatcccgtcgcacataccggggtg
cgaaaaatgcctgataaacagacgctgcaaaactggatggcggtgcgtggcggcgggctg
tgggtgcagcctaaagttgacggcgtcgccgttacgctggtgtacagcaagggcgaactg
gtgcaggcgataagtcgtggtgatgggattaaggggcactcatggttcgacaaggccagg
gcgattcccgccatcccgaaaaccacacaggggatccttgccgacagcgtcctgcagggc
gagatttttctccgtcagcccgctcatgttcagcaacggtcgggaggtattaacgcacgc
gccaaagtggcaggcgctatgctacggcgggatgccacttccatacttaacgagctggat
attttcatttgggcatggcccggtgggccgacatcttttccggagcggctgcggctgctg
gcagaaggcgggttccccttagtccagcaatggtcaaaaccggttacgtctgtagaagaa
gtagaacactggcgggcgcagtggtttaagagcccattaccgtttgtgactgatggcgtg
gtgatacggcaagtggaagagtcagcagcgcgaagctggcagcccggccagggtgactgg
gctgttgcctggaaatatgagcctgaagcgcagacgacggaagtcagggatattcacttt
agcgtaggtcgtagcggtaagctttctgcggtggcgctgctcgcaccggtaaaaatcgat
gataaagagattaagcgtgtgaatattggctcggtacgccggtggcaggcgtgggatatt
gcgcctggcgatcatgtccttgtcagcctcgccgggcgaggcattcctaaaattatgagt
gtggtttggcgcggtatagagcgcgtcaaaccgcaaccgcctgagccgcgcttcaataca
ttaagttgcttctattactcaccggattgccatgaacaatttttttcgcggttggcctgg
atgagctcgccctcggtgttagccatgtcaggtttaaaccgtgctggctggcagcagctt
catgatacgtttcgtttcgagcatatttattcttggcttggcttaaaccaacagcagttg
cagaatgcgcccggtttttctccggggcgagcgcttgaaatgtggcatcgtttcaatctg
gcacggcagcagcccttacggctttggctaaaatcgcttgggttgcctttgccaaatgcg
gcgctgaaccggctgccggataaagagtggcgtacggtagttgatcgcgatgaactcaac
tggcggcaattatcaggcgtgggaccggagcgtgcgcgtaagctggtgcagtttacgcgc
cacccgcaggtctccatgctggcaagctggctggggagtatgggtatttccgggtttagt
gttcagcgtgagaataggtaa
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