Aeromonas hydrophila pc104A: V429_06735
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Entry
V429_06735 CDS
T03193
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahp
Aeromonas hydrophila pc104A
Pathway
ahp03030
DNA replication
ahp03410
Base excision repair
ahp03420
Nucleotide excision repair
ahp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V429_06735 (ligA)
03410 Base excision repair
V429_06735 (ligA)
03420 Nucleotide excision repair
V429_06735 (ligA)
03430 Mismatch repair
V429_06735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahp03032
]
V429_06735 (ligA)
03400 DNA repair and recombination proteins [BR:
ahp03400
]
V429_06735 (ligA)
Enzymes [BR:
ahp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V429_06735 (ligA)
DNA replication proteins [BR:
ahp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V429_06735 (ligA)
DNA repair and recombination proteins [BR:
ahp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V429_06735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V429_06735 (ligA)
MMR (mismatch excision repair)
DNA ligase
V429_06735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V429_06735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AHX68580
LinkDB
All DBs
Position
1434071..1436077
Genome browser
AA seq
668 aa
AA seq
DB search
MSDILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIALEAEHPELKTPASPSV
RVGGQPLTAFKQVRHEIPMLSLDNVFSSEELQVFEQRMRDRLKREVSFTFCCEPKLDGLA
VSLLYVAGQLVQAATRGDGTTGEEITENVRTIKAIPLSLRGEGWPARLEVRGEVFMPKAG
FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLGGSHFG
RLNQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIALQEELG
FVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFPTECPVCGSAVERLEGE
AVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQ
LAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
SVEQLLEVADVGDIVAKHVYYFLRQPHNIEVLEALLAAGIQWPAIEKKEASEQPFAGKTF
VLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLVKAQELGITVWSEE
ELQQALQG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatatcctctcccgccaccgtcaactgtgtgagctgctgatcgagtacggtcat
cagtactatgtgctggacaaccccacggtgccggacgccgaatacgatcgcctgatgcgc
gagctgatcgcgctggaagccgagcaccccgagctgaagacgccggcctcgccgagcgtg
cgggtgggtggccagccgctgaccgccttcaaacaggtgcgccacgagatccccatgctg
agtctggacaacgtgttcagcagcgaggagctgcaggtcttcgagcagcggatgcgcgat
cgcctcaagcgggaggtgagctttaccttctgctgcgagcccaagctggacgggctggcg
gtgagcctgctctatgtggctggccagctggtgcaggccgccactcggggcgatggcacc
acgggcgaggagatcaccgagaacgtgcgcaccatcaaggccattcccttgtccttgcgt
ggcgagggctggccggcccggctggaagtgcgtggcgaggtgttcatgcccaaggctggg
ttcgaggcgatgaacgccaaggcgctggccgccggcgagaaggtgttcgtcaacccgcgc
aatgccgctgccggcagcctgcgtcagctcgattcacgcatcaccgccagccgcccgctg
gccttctacgcctatggcgtgggggtgggcggcgagcagctcggtggctctcacttcggt
cgcctcaatcagctcaaagagtgggggctgccgctcagccctgaagtgaagctcaaggag
ggggctgccggttgccaggcgttccacgacgacatcctggcgcgccgtggcgagctcccc
tacgagattgacggcgtggtctacaaggtggatgccatcgccctgcaggaggagctcggt
tttgtggcgcgggcaccgcgctgggccaccgcccacaagttcccggcccaggaagagatg
actttgcttgagaacgtcgagttccaggtcggccgtaccggcgccgtgaccccggtggcc
aagctcaaacctgtgtttgtcggcggcgtcaccgtctccaacgccaccctgcacaatgcc
gacgagattgagcgccttggcgtgatgatcggcgacaccgtgatcgtgcgccgggccggg
gacgtgatcccgcagatcgtggcggtggtggaggcgcagcgcccggcggatgctcgcgcg
attctcttcccgaccgagtgcccggtgtgcggttcggcggtggagcggctggagggagag
gcggtgacccgctgctccggcggcctgttctgcgaggcgcagcgcaaggaggcgatcaag
cacttcgccgcgcgtcgtgccatggacgtggacggcctcggcgacaagatagtggagcaa
ctggtggacaaggggctggtgaagaccccggccgatctgttcagcctcaatgccattcag
ctggccgggctcgagcggatggggcaaaagtcggccctcaatctggtggcggccatcgat
gcagcccgcagcaccacgctgccccgcttcctgtttgcgctggggatccgcgaagtgggg
gaggcgaccgccttgaacctcgccaaccacttcctgactctggacgccctgcgcgccgcc
tcggtggagcagttgctggaagtggccgacgtgggggacatagtggccaagcatgtctac
tacttcctgcgccagcctcacaacatcgaggtgctggaggccctgctggccgccggcatc
cagtggccggccatcgagaagaaagaggcaagcgagcagccttttgccggcaagaccttc
gtgctgaccggcaccctcaccaccttgtcgcgcaacgacgccaaggcggcgctgcaggcg
ctgggggccaaggtggcgggctcggtgtcggccaagaccgatgtgctggtggcgggggag
gcggcaggctccaagctggtcaaggcccaggagctcggcatcaccgtctggagtgaagaa
gagctgcaacaggcgttgcagggctga
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integrated database retrieval system
