Azonexus hydrophilus: AADV58_11075
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Entry
AADV58_11075 CDS
T10592
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahv Azonexus hydrophilus
Pathway
ahv03030
DNA replication
ahv03410
Base excision repair
ahv03420
Nucleotide excision repair
ahv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AADV58_11075 (ligA)
03410 Base excision repair
AADV58_11075 (ligA)
03420 Nucleotide excision repair
AADV58_11075 (ligA)
03430 Mismatch repair
AADV58_11075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahv03032
]
AADV58_11075 (ligA)
03400 DNA repair and recombination proteins [BR:
ahv03400
]
AADV58_11075 (ligA)
Enzymes [BR:
ahv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AADV58_11075 (ligA)
DNA replication proteins [BR:
ahv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AADV58_11075 (ligA)
DNA repair and recombination proteins [BR:
ahv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AADV58_11075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AADV58_11075 (ligA)
MMR (mismatch excision repair)
DNA ligase
AADV58_11075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AADV58_11075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
BRCT_2
DUF7340
Motif
Other DBs
NCBI-ProteinID:
WZJ23169
LinkDB
All DBs
Position
complement(2291722..2294097)
Genome browser
AA seq
791 aa
AA seq
DB search
MLSPEVVERAAWLRAELERHNHAYYVLDAPTIPDADYDALFRELQALEAEHPALATADSP
TRRVGGKPLAQFAPVVHDVAMLSIQTETDTQSSGALNFDARIRRELELGEGAPAVDYAAE
LKFDGLAVSLRYENGVLVRGATRGDGTTGEDVTQNLRTIGQIPLRLRGEAPPVLEVRGEV
YMCRGDLDAYNAAAAARGEKTLVNPRNAAAGSVRQLDPAIAASRPLKFFAYGIGAVDGWQ
QPPTHSGLLDALAAFGLPVCEHRAVLAGGEALAGFHRRIAELRDSLPFDIDGVVYKVNDL
ELQRRLGFRSREPRWAVAHKYPPQEASTVVEAIDIQVGRTGALTPVARLKPVFVGGVTVT
NATLHNADEVERKGGICVGDTVIVRRAGDVIPEVVGVIAERRPAAAQPFMMPAACPVCGA
HTVREPGEAVTRCSGGFSCSAQRIQAILHFAGRRMMDIEGLGDRYVERLVEFDYVHGVAD
LYKLTLADLLEMKRRADEKDGTVPETVKAGQTPTRWAENLLAGIAASKTPKLARLLFALG
IRHVGETTAKTLADWLGSLDRVRRAPAPLLSVLPDIGATVAAAIADFFAEQRNLDAVDAL
LAAGVAPNDEHPPHPGLAERLAWAEIYAALAVPKLTAKRAAQLAAVADGGALADGSIDAA
ALSVAGLPGEVISALFEWLNQSGRRGLLAGVARRREELLAAMPQGAVLAGPAPLAGKTLV
LTGTLPTLKRDDAKAMIEAAGGKVAGSVSKKTDYVVAGEEAGSKLDKARELGVAVIDEAA
LIELLKQGEQE
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcaccggaagtcgtcgagcgcgcagcctggctgcgtgcagaactggaacgtcac
aaccacgcgtattacgtcctcgatgcaccgaccattccggatgccgattacgacgcgctg
ttccgcgaattgcaggcgctggaagccgagcatccggcgctggcgacggcggattcgccg
acccggcgcgtcggcggcaaaccgctggcgcagtttgcgccggtggtgcacgacgtggcc
atgctgtcgatccagaccgagaccgatacccaatccagcggtgcgctcaatttcgatgcc
cgcatccggcgcgagctggaactgggcgagggcgcgccggccgtcgattacgccgccgaa
ctgaaattcgacggcctggccgtcagcctgcgttacgaaaacggcgtgctggtgcgtggt
gcaacgcgcggcgacggcacgaccggcgaggacgtgacccagaacctgcgcaccatcggc
cagattccgttgcgcctgcgcggtgaagcaccgccagtgctggaggtgcgcggcgaggtg
tacatgtgtcgcggcgatcttgatgcctataacgccgctgctgcggcgcgcggtgaaaag
accctggtcaatccgcgcaacgccgctgccggcagcgttcgccagctcgatccggccatc
gccgctagccggccgctgaagttcttcgcctacggtattggtgcggtagacggctggcag
cagccgccaacgcacagtggcctgctcgatgcgctggccgccttcggcctgccggtgtgc
gagcatcgtgcggtgttggcgggcggcgaggcgctggctggttttcaccggcgcatcgcc
gaattgcgcgacagcctgccgttcgacatcgacggcgtggtgtacaaggtcaatgacctg
gaactgcagcgtcgcctcggtttccgctcgcgcgagccgcgctgggcggtggcgcacaag
tatccgccgcaggaagcatcgaccgtggtcgaggccatcgacatccaggtcggccgcacc
ggcgcgctgacgccggtggcgcgcctgaagccggtgtttgtcggcggggtgacggtgacc
aatgcgaccctgcacaacgccgacgaggtcgagcgcaagggcggcatttgcgttggcgac
acggtgatcgtgcgccgtgccggtgatgtcatcccggaagtcgtcggtgtcatcgccgag
cgccggccggccgctgcccagccgttcatgatgccggctgcctgtccggtgtgcggtgcg
cacacggtgcgtgagccgggcgaggcggtgacccgctgttccggtggtttctcgtgcagc
gcccagcgcatccaggcgatcctgcatttcgccggtcgccggatgatggatatcgaaggc
ctgggcgaccgttacgtcgagcgcctggttgaattcgactacgtgcacggcgttgccgat
ctgtacaagctgacgctggccgacctgctggaaatgaagcggcgcgccgacgagaaagac
ggcaccgtcccggaaacggtcaaggccgggcagacgccgacgcgctgggccgagaacctg
ctcgccggcattgccgccagcaaaacgccgaaactcgcccgactgctgttcgcgctgggc
atccgccacgtcggcgagaccactgccaagacgctggccgactggctgggcagcctggac
cgggtgcgccgcgcgccggcgccgctgctgtccgtgctgcccgacatcggcgcgacggtg
gcggcagcgattgccgatttctttgccgagcagcgcaacctcgatgcggtcgatgccttg
ctcgctgccggcgtcgcgcccaatgatgaacatccgccgcatcccggcctggccgaacgc
ctggcctgggccgaaatctatgcagcgctggccgtgccgaagctgaccgccaaacgcgct
gcccaattggcggctgtggccgacggcggcgcgcttgccgatggcagcatcgatgcggcg
gcgttatcggtggccggtttgcccggtgaagtgatcagcgccttgtttgagtggctgaac
cagtcgggcagacgtggtctgctggccggtgtggcccgccgtcgagaagaactgctggcc
gccatgccgcaaggcgcggtgcttgccggaccggcgccgctggccggcaagacgctggtg
ctgactggtacgctgccgaccctgaaacgtgacgacgccaaagcgatgatcgaagcggct
ggcggcaaggtggccggctcggtatcgaagaagaccgactacgtggtcgccggcgaggaa
gccggcagcaagctcgacaaggcgcgcgagcttggcgttgccgtgattgacgaggcagca
ttgatcgaattgttgaagcagggagagcaagaatga
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