Pseudalgibacter alginicilyticus: APS56_16340
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Entry
APS56_16340 CDS
T04100
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahz
Pseudalgibacter alginicilyticus
Pathway
ahz03030
DNA replication
ahz03410
Base excision repair
ahz03420
Nucleotide excision repair
ahz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APS56_16340
03410 Base excision repair
APS56_16340
03420 Nucleotide excision repair
APS56_16340
03430 Mismatch repair
APS56_16340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahz03032
]
APS56_16340
03400 DNA repair and recombination proteins [BR:
ahz03400
]
APS56_16340
Enzymes [BR:
ahz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
APS56_16340
DNA replication proteins [BR:
ahz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
APS56_16340
DNA repair and recombination proteins [BR:
ahz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
APS56_16340
NER (nucleotide excision repair)
GGR (global genome repair) factors
APS56_16340
MMR (mismatch excision repair)
DNA ligase
APS56_16340
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APS56_16340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
5_3_exonuc
Auto_anti-p27
UPF0164
SLIDE
HHH
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
ALJ06607
UniProt:
A0A0P0DCB8
LinkDB
All DBs
Position
3926573..3928570
Genome browser
AA seq
665 aa
AA seq
DB search
MNNIELKIHTLRNELREHNYNYYVLDNATISDYDFDIKLKELQELEMKYPEFFDANSPTQ
RVGGQVTKNFETIPHEHRMYSLENSYSKEDLQDWETRIKKLIDGDVQYVCELKYDGASIS
LTYEDGRLLKAVTRGDGFQGDNVTANVKTIKSVPLQLKGDFPEKFDIRGEIVLPFDGFNK
MNEERIEIGEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYNLTGNNLGVNAQFDGLKK
AREWGFKVPEAAKLVNSIAEVLEFITYWDVHRHDLPYETDGVVVKVNDLQQQEELGYTAK
APRWAMAYKFKAERISTKLNSITYQVGRTGAITPVANLEPVELAGTKVKRASLHNADQIA
KLDIRINDEVYVEKGGEIIPKILGVDLGKRPENSIPTQYITHCPECGTELVRQVGEAQHY
CPNYNGCQPQIIGRIQHFISRKAMDIEGLGGETVALLVNQGLISNYSDLYELTKEVVIPL
ERMAEKSADNLIQGIEQSKNIPFERVLYALGIRYVGETVAKKLVKHYKSIEKIAEASQED
LINVDEIGIKIAKSVNAFFASEENMYIINRLQAFGVQLEISAEKLKSQTNKLDGQIFVVS
GVFESISRDELKKMIEDNGGRVSSSISSKTSFIIAGDKMGPSKKEKAEKLKINIIDEYEF
LHRLI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaataatatagaattaaaaatacatacactgcgtaatgaactacgagaacataattat
aactattatgttttggataatgctacaatttctgattatgattttgatataaaactcaaa
gaacttcaggaattagaaatgaagtatcccgaattttttgacgctaattctccaacacaa
cgcgtaggtgggcaagtaactaaaaattttgaaaccattccacacgaacatcgtatgtat
tctttggagaattcttattcaaaagaggatctgcaagattgggaaactcgaattaaaaag
ttaatagatggtgatgttcaatatgtttgtgaattaaagtatgacggcgcttcaattagt
ttaacctatgaagatggcagattgcttaaagctgttacccgaggcgatggttttcaggga
gataatgttactgctaatgttaaaactataaaatcggtacccttgcagttaaaaggtgat
ttcccagaaaaatttgatattcgtggtgagattgtattgccgttcgatggattcaataaa
atgaatgaagagcgtattgaaataggggaagaaccatatagaaaccctagaaataccgcc
tccggaagtttaaaactacaggatagtgccgaggttgctaagcgtccattggaatgcttg
ctgtataatttaacaggcaataatttgggtgttaatgctcagtttgatggtttaaagaaa
gcaagagaatgggggtttaaggtgccagaagctgctaagttggtaaattctattgctgag
gttttagagtttataacgtattgggatgtgcatagacatgatctgccttatgaaactgat
ggggtagttgtgaaagtgaatgatttgcagcaacaagaagagttaggttatacggctaaa
gctccccgttgggctatggcttataaatttaaggcagagcgtatttctacaaaacttaat
agtataacttaccaagtaggaagaacaggtgctattactcctgtagcaaatttggaacct
gtagaattagcgggaacaaaggtaaaacgtgcatcactacacaatgcagaccagattgca
aaattggatattcgaataaatgatgaagtttatgttgaaaaggggggcgagattattcca
aaaatattaggggttgatttaggtaaacgtccagagaattctattccaacacagtatatt
actcattgccctgagtgtgggacagaattggttaggcaggtaggagaagctcagcattat
tgtccaaattacaatggttgtcaaccacaaataattggacgtattcagcattttatttca
agaaaggcaatggatattgaaggcttgggaggtgaaacagtagcgcttttagttaatcaa
ggtttaatttctaattattctgatttgtatgaattaaccaaagaggttgtgataccttta
gaacgcatggctgaaaaaagtgctgataatttaattcaaggtattgagcagtctaaaaat
attccttttgaacgtgtattatacgctttaggaattaggtatgtaggagagacagtagcg
aagaaacttgtaaaacattataaaagtattgagaagattgcagaagcatcacaagaagat
ttaattaatgtagatgaaattggaattaaaattgctaaaagtgtgaatgctttttttgct
tctgaagaaaatatgtatattattaatcgtttacaagcctttggtgtacagttagaaatt
tctgcagaaaagcttaaaagtcaaactaacaaattagatggtcaaatttttgtggtatct
ggtgtttttgaaagtatttctagggatgaacttaaaaaaatgattgaagataacggaggt
agagtaagtagttctatttcatcaaaaaccagttttataattgcaggagacaaaatgggg
ccaagtaaaaaagaaaaagcagaaaaattaaaaataaatataattgacgagtatgaattc
ttacatagattaatataa
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