Anomalospiza imberbis (cuckoo-finch): 137486875
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Entry
137486875 CDS
T11605
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Pathway
aib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137486875 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aib03041
]
137486875 (EFTUD2)
Spliceosome [BR:
aib03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
137486875 (EFTUD2)
Complex C
U5 SnRNP specific factors
137486875 (EFTUD2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
137486875
NCBI-ProteinID:
XP_068068545
LinkDB
All DBs
Position
22:1564635..1586520
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGREAKDLDELEDDDDDDDMGEHDEEHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactacatcgggcccgagctggactcggac
gatgacgacgatgagctgggccgagaggccaaagacttggacgagctggaggatgatgac
gatgacgatgacatgggggagcacgatgaggagcaccccgggatggaggtggtgctgcac
gaggacaagaagtactaccccacagcagaggaggtctatgggcctgaggtggagaccatc
gtgcaggaggaggacacacagccactcactgagcccattatcaaacctgtgaaaaccaag
aagttctccctgatggagcagacgctgccggtcactgtctacgagatggatttcctggca
gatctgatggacaactcggagctgatccggaatgtgactctgtgtgggcacctgcaccac
ggcaagacgtgctttgttgactgcctgatagagcagacgcacccggagatccggaagcgc
gacgatcaggatctctgctacactgatatattgttcacagagcaggagagaggggtgggg
atcaagagcaccccagtgaccattgttctgccagacaccaagggaaagtctttcctcttc
aacatcattgacactccaggtcatgtgaatttttctgatgaggtgacagccggccttcgc
atctcggacggcgtcgtgctcttcatcgatgcggccgagggggtgatgctgaacacggag
aggctgatcaagcacgcggtgcaggaaaggctggcagtgactgtgtgcatcaacaagatc
gacagactcatcctggagctgaaactgccccccacagatgcttactacaaactcagacac
atcgtagacgaagttaatggtttgatcagcatgtattccaccgatgagaacctcgtgctg
tctccccttctggggaacgtgtgcttctccagctctcagtacagcatctgcttcacactg
gggtcttttgcaaagatttatgcagacacatatggagacatcaattaccaggagtttgcg
aagcggctttggggcgacatctacttcaacccgaagacccgcaagttcaccaagaaggcc
ccgacgagcagttcccagcgcagcttcgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggagatgtggacacaaccctgcccaggactctggatgaacttggc
atccacctgaccaaagaggaattgaagctgaacatccggcccctcctgcggctcgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacattccctcc
ccaaaagtgggggccaagacaaaaattgagcacacctacaccggcggtgtcgactccgac
ctgggggaggccatgagcgagtgcgaccctgacggtcccttgatgtgtcacacaaccaaa
atgtacagcactgatgatggtgtccagttccacgccttcggcagggtgctcagtggcacc
atccatgctgggcagcctgtgaaggtccttggggagaactacaccctggaagatgaggag
gactcccagatctgcaccgtcggacgcctctggatctcagttgcaaggtatcacattgag
gtgaacagagttcctgctggcaactgggtgctgatcgagggcgtggaccagcccatagtg
aagacggcgactgtgacagagcctcggggcaatgaggaggctcagatcttccgtcccttg
aagttcaacaccacgtctgttatcaagatagctgtggagccagtcaacccctcagagctc
cccaaaatgttagatggtctccgcaaagtcaacaagagctacccctcacttacaactaag
gtggaagagtctggggagcacgtgatcctgggaacaggagagctgtacctggactgtgtg
atgcacgacctgcggaagatgtactccgagatcgacatcaaggtggctgatccagtggtg
acgttctgtgagacagtggtggaaacatcctccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacgatgattgctgagcccctggagaagggactggcagaggacatt
gagaacgaagtggtgcagataacatggaacagaaagaagctgggtgaattcttccagacc
aaatacgactgggatttgctggctgcccgttccatctgggcctttgggccagatgccact
ggcccaaacatcctggtggatgacacactgccctcagaggtggacaagtctctgctgggt
tcagtgaaggacagcatcgtgcagggcttccagtgggggaccagggaagggcccctttgt
gatgaattgatccgcaatgtgaagttcaagatcctggacgcggtgattgctcaggagccc
ttgcacaggggtggagggcagatcatccccacggcccgcagggtcgtgtactccgccttc
ctcatggccacccctcgcctgatggagccctactacttcgtggaggtccaggcccctgct
gactgcgtgtccgccgtgtacacagtgctggcccggcgcagaggccacgtgacccaggat
gctccgatcccaggctctcccctctacaccatcaaagccttcatcccagccattgattcc
tttgggtttgagacggacttgaggacccacacacagggacaagccttctctctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgtcatccggccg
ctggagccgcagccagccccacacctggccagggagttcatgatcaagaccaggcgcagg
aagggcctgagtgaggacgtgagcatcagcaagttcttcgacgaccccatgttgctggaa
ctggccaagcaagacgtcgttctcaactaccccatgtaa
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