Aequorivita iocasae: JK629_15385
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Entry
JK629_15385 CDS
T07991
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aic
Aequorivita iocasae
Pathway
aic03030
DNA replication
aic03410
Base excision repair
aic03420
Nucleotide excision repair
aic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JK629_15385 (ligA)
03410 Base excision repair
JK629_15385 (ligA)
03420 Nucleotide excision repair
JK629_15385 (ligA)
03430 Mismatch repair
JK629_15385 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aic03032
]
JK629_15385 (ligA)
03400 DNA repair and recombination proteins [BR:
aic03400
]
JK629_15385 (ligA)
Enzymes [BR:
aic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JK629_15385 (ligA)
DNA replication proteins [BR:
aic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JK629_15385 (ligA)
DNA repair and recombination proteins [BR:
aic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JK629_15385 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JK629_15385 (ligA)
MMR (mismatch excision repair)
DNA ligase
JK629_15385 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JK629_15385 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QQX76684
LinkDB
All DBs
Position
complement(3345886..3347880)
Genome browser
AA seq
664 aa
AA seq
DB search
MNIEQQITTLRNELREHNYNYYVLDTPTISDFEFDQKLKQLQELEKAHPEFYDANSPTLR
VGGEITKNFETVPHTYRMFSLDNSYSKEDLEDWEKRIEKMVDGKVEFTCELKYDGASISL
TYENGKLKKAVTRGDGFQGDDVTANVKTIRSVPLQLKGDYPPLFDIRGEIVLPFEGFAKM
NAERVDLGEEPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYSLKGERLPIKTQFESLEKA
RQWGFKVPEAAKLAKNLEEVLEFVNYWDIHRHQLPYETDGVVVKVNNLQQQEELGYTAKS
PRWAMAYKFKAEQVSTVLNQITYQVGRTGAITPVANLEPVELAGTIVKRASLYNADQIAK
LDIREGDTVFVEKGGEIIPKIIGVDFTQRDPNSLPTNYITECPECGTTLVRTEGEAQHYC
PNTEGCPPQIIGRIQHFISRKAMDIEGLGGETVALLVNNGLINNYADLYLLKEEQIIPLE
RMAQKSAENMINGIEASKEIPFERVLFALGIRYVGETVAKKLAKHYKTIDALKNASEEEL
VTVDEIGERIAQSVVSFFASEENIAIIERLKSYGVQLEISAEKLANQTNTLNGNTFVVSG
VFTKVSRDELKKLIEDNGGKVSSSISSKTNYVVAGENMGPSKKTKAESLGVAIISEDDFL
QMIS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgaacagcaaatcacaaccctccgcaacgagctccgcgagcataactacaac
tattacgtactcgatacacctacaatttccgactttgagtttgaccaaaaactaaagcaa
cttcaggaactggaaaaggcacatcccgaattttatgatgctaattccccaactttaagg
gttggtggcgaaatcaccaagaattttgaaaccgttccgcatacctatagaatgttttcc
ttggataattcctattcaaaggaagatctggaggattgggaaaagcgtatcgaaaaaatg
gtggacggcaaagtggaattcacctgtgaacttaaatacgacggtgcttcaataagtttg
acttacgaaaatggaaagctgaaaaaagccgtaacccgtggcgacggctttcagggcgat
gacgttaccgcaaacgtaaagaccatacgttcggtgcccttacaattgaaaggcgattat
ccgccactctttgatattcggggcgaaatagttttgccctttgaaggcttcgcaaagatg
aatgcagaaagagtagatttgggcgaagaaccttatcgaaacccacgtaacacagcatcg
ggcagtttaaaattgcaagacagcgcagaggttgccaagcgtccgctcgattgtctttta
tacagtttgaaaggcgaacggcttcccataaaaacccaatttgaaagcctcgaaaaagca
aggcaatggggctttaaagttcccgaagccgccaaactcgccaaaaatctggaagaggtg
ttggagttcgtgaattattgggacattcaccgccaccaacttccctacgaaaccgatggg
gtagtagtaaaggtgaacaacctgcagcagcaggaagagctgggctacaccgcaaaatcg
ccccgctgggcgatggcctataaattcaaggcagagcaggtttccaccgttttaaatcaa
atcacttatcaggtaggtagaacgggcgccatcacgccagttgcaaacttggagcctgta
gagttggcgggaaccatcgtaaaacgcgcctccttatacaacgcagaccagattgcaaag
ctcgacatacgcgagggcgatacggtttttgtggaaaagggcggtgaaataattccgaaa
attatcggggtagattttacacagcgcgacccgaattctttgccaacaaattacataacc
gaatgtcctgaatgcggaacgactttggtccgcaccgaaggcgaagcacagcactattgc
cccaataccgaagggtgcccgccacaaattattggccgaatccagcatttcatttcccgc
aaggcaatggatattgaaggtttgggcggcgaaaccgtcgcacttttggtaaacaacggt
ttgataaataattatgccgatttgtatcttttaaaagaagaacagatcattcccttggaa
cgaatggcgcagaaaagcgctgaaaatatgattaatggaattgaagcttccaaagagatt
ccctttgaaagagtcctttttgccttgggaataagatacgtaggcgaaaccgtggccaaa
aagcttgcgaagcattacaaaacaatagatgccttaaaaaacgcttccgaagaagagctt
gtaactgttgacgaaataggcgaacgaatcgcccaaagcgtggtttcatttttcgcctcc
gaagaaaatatcgctattattgaacggctaaaaagttatggcgtgcaattagagatttcc
gcagaaaaacttgccaaccaaaccaatactttaaatggaaataccttcgttgtttccggc
gtcttcacaaaggtttcccgtgacgaattgaaaaaattgatcgaggacaacggcggaaag
gtttccagctccatttcgtccaaaaccaattatgtggtggcaggcgagaatatggggcca
agcaaaaaaaccaaggccgaaagtttgggcgtcgccatcatttcagaagacgatttttta
caaatgatttcataa
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integrated database retrieval system
