Auritidibacter ignavus: QDX25_05515
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Entry
QDX25_05515 CDS
T09017
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aig
Auritidibacter ignavus
Pathway
aig03030
DNA replication
aig03410
Base excision repair
aig03420
Nucleotide excision repair
aig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QDX25_05515 (ligA)
03410 Base excision repair
QDX25_05515 (ligA)
03420 Nucleotide excision repair
QDX25_05515 (ligA)
03430 Mismatch repair
QDX25_05515 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aig03032
]
QDX25_05515 (ligA)
03400 DNA repair and recombination proteins [BR:
aig03400
]
QDX25_05515 (ligA)
Enzymes [BR:
aig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QDX25_05515 (ligA)
DNA replication proteins [BR:
aig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QDX25_05515 (ligA)
DNA repair and recombination proteins [BR:
aig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QDX25_05515 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QDX25_05515 (ligA)
MMR (mismatch excision repair)
DNA ligase
QDX25_05515 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QDX25_05515 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WGH82607
LinkDB
All DBs
Position
complement(1212573..1214870)
Genome browser
AA seq
765 aa
AA seq
DB search
MTSSAEHHEPDVIPDSELREHYEQLISQVRRHRTAYYQHDEPEISDAAYDKLYRELEDLE
AMHPEIVANDSPTQDVGGDVSAAFTPVEHLNQMYSLEDVFSLQELTTWFTRTETSLHTIR
PDMRPAWLAEVKIDGLAIALVYRHGVLERAATRGDGTVGEDVTHNVRTIKDIPQRLRGDN
IPELVEVRGEIFMPSQAFREFNQQRAESGLAPFANPRNAAAGSLRQKDPALTAQRPLSMF
VHGIGAREGLELTSQYETYQQLGEWGLPISPYTTFFSAESAEAAHQDVLDYIAQYGDQRH
ELVHDIDGIVVKIDDFDLQRQLGYTSRTPRWAVAYKYPPEEVHTQLLDIRVNVGRTGRVT
PYAVMAPVVVAGSTVSMATLHNQDVVTAKNVKIGDTVVLRKAGDVIPEIVGPVLPIREQI
QSGERDGEIRDFQMPSECPSCGEPLAPAKEGDVDLRCLNAEKCPAQLTGRIEHAGSRGAF
DIEALGEEAAIWLTNGPGPDPAHNHGHVHPQGPGVLTSDAQLFDLAETNGDPDLKAALGE
VKVWREKRVKDKDGHLVPSGTWQLQPYFYNQRGEPTANTKKLFAELDKAKEQPLWRVLVA
LSIRYVGPTAARALAVAFGSLPAIRKAAQSGDPEAFAHVDGIGPTIAEALVEFFSEPWRL
KVIDAWAARGVRTEDERNQAMTKTLTGLTLVVTGTLEEFSRDSAKEAILARGGKATGSVS
KKTDYLIAGANAGSKLDKAESLGITVLDEAGFQRLLEQGPDGAEG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgacttcctccgcagaacaccacgagccagacgtcatcccggattccgagctacgtgaa
cactacgagcaactcatctcccaggtgcgccggcatcgcaccgcgtattaccaacacgat
gagccggaaatctccgacgccgcctacgacaagctgtaccgcgagcttgaagacctcgaa
gcgatgcacccggagatcgtggccaatgactcacccacccaagacgtcggtggcgacgtc
tcggcggccttcaccccggtggaacacctgaaccagatgtactcgctggaagatgtcttc
tccctgcaggagctgaccacctggttcactcgcaccgagacctcactgcacaccatccgc
cccgatatgcgtccggcttggttagctgaagtcaagatcgatggtttggccatcgcgctg
gtgtatcgccatggcgtcttagagcgggccgcaactcgtggggatggcactgtcggtgaa
gatgtgacccacaacgtgcgcaccatcaaagacattccccaacgactccgtggagacaac
atccctgagttggttgaagtccgtggagagatctttatgccttcccaggccttccgagaa
ttcaaccagcaacgtgctgagtccgggttggcgccctttgccaacccgcgtaacgccgcg
gccgggtcactgcgacaaaaggacccggccctcaccgcccaacgtcccctatcgatgttt
gtccatggcattggagctcgggaaggactggagctcaccagccaatacgagacctaccag
caactgggggagtgggggctacctatcagcccgtacaccacctttttctctgctgaatcc
gccgaagcagcgcaccaggatgtgctggattatatcgctcagtatggcgaccagcgccac
gagctggtgcatgacattgatggcatcgtggtcaagatcgatgacttcgacctgcaacgc
cagttaggctatacctcacggacaccacgctgggcggtggcttataaatacccaccggaa
gaagtccatacccagttattggatattcgcgtcaacgttggccgtaccggacgagtcacc
ccctacgcagtgatggcaccggtcgtggtggccggctccaccgtctccatggcgaccctg
cacaaccaagacgtggtcacagcgaagaacgtcaagatcggggacaccgtggtgttgcgc
aaggccggtgacgtgatccccgagattgtcgggccggtgctgccgattcgtgaacagatc
cagtccggcgagcgcgatggtgagattcgggactttcagatgccatccgagtgtccttcg
tgtggtgagccgttggccccggcgaaagaaggggacgtggatctgcggtgtctcaatgcc
gagaagtgtccggcgcaattgaccggacgcattgagcacgccggctcccggggggccttc
gacattgaagccctgggggaagaagccgctatttggctaaccaatgggcccggacctgac
ccggcccataaccacgggcacgtccacccccaaggcccgggcgtgctgacctcggatgct
cagctgtttgacttggcagaaactaacggtgacccggacctgaaagcagcgctgggcgag
gtgaaggtctggcgcgaaaaacgcgtcaaagacaaggacgggcacctggtccccagtggc
acgtggcagttacagccctatttttacaatcaacgtggcgaacccaccgcgaacaccaag
aagttattcgccgaactggacaaagccaaagaacaaccgctctggcgagtgctggtggcg
ctgtcgatccgctacgtcggacccaccgccgcccgggcgctggccgtggccttcgggtca
ctgccggctatccgaaaagccgcccagtccggtgaccctgaagcctttgctcacgttgat
ggaattggcccgactattgccgaggcactggtcgagttcttctccgaaccatggcgactg
aaggtcatcgatgcgtgggctgctcgcggggtgcgcaccgaagacgaacgcaaccaagcc
atgaccaaaaccctgacggggctcacgctcgtggtgaccggcacgttggaagaattcagc
agggactcagccaaagaagccattcttgcccgtggcggtaaagccaccgggtcggtgtcg
aagaagaccgattatctcatcgcgggcgccaatgccggttctaaactcgataaagccgaa
tcactgggcatcaccgtcctcgacgaagcgggattccaacggctgttggaacaaggacct
gacggcgctgaaggatag
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integrated database retrieval system
