Azospira inquinata: Azoinq_00250
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Entry
Azoinq_00250 CDS
T07865
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aiq
Azospira inquinata
Pathway
aiq03030
DNA replication
aiq03410
Base excision repair
aiq03420
Nucleotide excision repair
aiq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aiq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Azoinq_00250 (ligA)
03410 Base excision repair
Azoinq_00250 (ligA)
03420 Nucleotide excision repair
Azoinq_00250 (ligA)
03430 Mismatch repair
Azoinq_00250 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aiq03032
]
Azoinq_00250 (ligA)
03400 DNA repair and recombination proteins [BR:
aiq03400
]
Azoinq_00250 (ligA)
Enzymes [BR:
aiq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Azoinq_00250 (ligA)
DNA replication proteins [BR:
aiq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Azoinq_00250 (ligA)
DNA repair and recombination proteins [BR:
aiq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Azoinq_00250 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Azoinq_00250 (ligA)
MMR (mismatch excision repair)
DNA ligase
Azoinq_00250 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Azoinq_00250 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QWT49091
UniProt:
A0A975SN24
LinkDB
All DBs
Position
complement(52502..54889)
Genome browser
AA seq
795 aa
AA seq
DB search
MVAPIAVEARARALRETLTRYSHAYYVLDNPLVPDGEYDRLFQELQDLEQGFPDLRSPDS
PTLRVGGQPLSQFASVIHAVPMLSIQTETETGPEGAWSFDARVRKELELPDEAPPVEYVA
ELKFDGLAVNLRYENGLFVQGATRGDGFQGEDITQNLRTVRQIPLRLQGNPPPLLEIRGE
VYMRKDDLEAYNRKAEARGDKTLVNPRNAAAGTLRQLDPAIAASRPLCFFAYGLGAVEGW
ELPQTHAGLLDALAAFGVPVCEHRRVVRGPAALEEFHLDVAKLRETLPFDIDGVVYKVNS
LDWQRQLGFRSREPRWAVAHKYPPQEMLTRVLAIDIQVGRTGALTPVARLEPVFVGGATV
TNATLHNEDEIQRKGGICLGDTVIVRRAGDVIPEVVGMVAERRPADAQPFVMPTTCPVCG
AHVVREPGEAVARCSGGFSCQAQRIQAILHFAGRRMMDIEGLGERYVERLVELDFIHGVA
DLYRLTLDDLLEMKRRADARDGTTPETAKQGQTPTRWAENLLAGIAGSKRPPLARLLFAL
GIRHVGESTAKTLADWLGTLDRVRRAPMALLSVLPDIGGVVAASIADFFDEPRNGAALEA
LLAAGVAPRDEHPPAPRLAEKLDWAVLYAALNVPKLTDIQARRLAELVPEGADLARLPAF
IGPLAVLPREVGDALSHWLEEENGRAQLERLAGFRQELLEALPEPDGDTSASPAAGKTFV
LTGTLPTLKRDQAKAMIEAAGGKVSGSVSKKTHYVVAGEEAGSKLDNANKLGIPVLDEAG
LLALLNLESVHEERS
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggttgcacccattgcggtggaggcgcgggcccgcgccctgcgggagacgctgacccgc
tatagccacgcctattacgttctggataatcccctggtgccggacggggagtatgaccgg
ctgttccaggaattgcaggatttggaacaaggttttccggacctgcgtagcccggattcc
cccactctgcgggtaggcggccagcctctgagccagttcgcctccgtgatccatgcggtg
cccatgctgtccatccagacggagacggaaacgggcccggaaggggcctggagtttcgat
gcccgggtgcgcaaggaactggaactgccggacgaggccccaccggtggaatatgtggcg
gaactgaaatttgacggcttggccgtcaatctccgctatgagaacggcctttttgtccag
ggcgccacccggggcgacggttttcagggggaagacattacccagaatctgcgcaccgtg
cgtcagattcccctgcgcctgcaaggcaatccgccccccctcctggaaatccggggggag
gtctatatgcgcaaggacgacctggaggcgtacaaccggaaagcggaggcccggggggat
aagaccctggtcaatccccgcaatgcggcggcgggcaccctgcgccagctggacccggcc
attgcagccagccgtcccctgtgcttttttgcctacggcctgggggccgtggaaggctgg
gaactgccccaaacccatgccgggctcctggacgccctggccgctttcggcgtgccggtt
tgcgaacatcgccgggtggtgcgggggccggcggccctggaagagttccatctggatgtg
gccaagctccgggaaaccctgccctttgatatcgacggggtggtgtacaaggtcaattcc
ctggactggcagcgccagctgggttttcgctcccgggagccccgctgggccgtggcccac
aaatatccgccccaggaaatgctgacccgggtgctggccatcgacatccaggtgggccgc
accggtgccctgaccccggtagcccggctagagccggtgttcgtcggcggcgccacggtg
accaacgccaccctgcacaatgaggacgaaatccagcgcaagggcggcatttgcctgggg
gatacggtcatcgtgcgccgcgccggagacgtgattccggaagtggtgggaatggtggcg
gaacgccgtccggcggacgcccaacccttcgtcatgcccaccacctgcccggtgtgcggc
gcccatgtggtgcgggagccgggggaagcggtggcccgctgttccggtggattttcctgt
caggcccagcgcatccaggccattctccactttgccgggcgccgcatgatggacatcgaa
ggcctaggggaacggtatgtggagcggctggtggagctggacttcatccacggggtggcc
gacctctatcgcttgaccctggacgatctcctggaaatgaagcgccgggccgatgcccgg
gacgggaccacaccggaaacggcgaagcagggccagacacccacccgctgggcggaaaac
ctgctggcgggtattgctggcagtaaacgtccccccctggcccggctgctcttcgccctg
ggtatccgtcatgtgggggagagcactgccaagaccctggcagattggctcggcaccctg
gaccgggtacgccgggcccccatggccctgctgtccgtgctgccggatatcggcggggtg
gtggcggcttccatcgcggatttctttgacgagccccgtaacggggcggctctggaagcc
cttctggccgccggggtggcgccccgggacgagcatccgcctgccccccggctggcggaa
aagctggattgggccgtgctttacgccgccctgaatgtgcccaagctcacggacatccag
gctcgccgtctggccgaactggtgccggaaggggccgatttggcccgcctgcccgctttc
atcggccccctggccgtgttgccccgggaggtgggggatgccctgtcccactggctggaa
gaggaaaacgggcgagcccagctggagcggctggccggtttccgccaggaattgctggaa
gccctgccggagccggatggagatacctccgcctctcccgccgccggtaagacctttgtc
ctcaccggcaccctgcctaccttaaagcgggaccaggccaaggccatgattgaggcggcc
gggggcaaggtgagcggttccgtgtccaagaaaacccattatgtggtggccggcgaagaa
gccggctccaagctggataacgccaacaagctgggcatccccgtcctggacgaggctggc
ttgttggccctgttaaatctggagagtgtgcatgaagagcgttcgtaa
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