Argopecten irradians (bay scallop): 138308485
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Entry
138308485 CDS
T10542
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
airr Argopecten irradians (bay scallop)
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
airr03036
]
138308485
03400 DNA repair and recombination proteins [BR:
airr03400
]
138308485
Chromosome and associated proteins [BR:
airr03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
138308485
DNA repair and recombination proteins [BR:
airr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
138308485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_2nd
Ig_SMCHD1_4th
Ig_SMCHD1_7th
Ig_SMCHD1_5th
HATPase_c_3
SMC_hinge
HATPase_c
SP_0191-like
Motif
Other DBs
NCBI-GeneID:
138308485
NCBI-ProteinID:
XP_069105583
LinkDB
All DBs
Position
15:complement(22949484..23020185)
Genome browser
AA seq
2050 aa
AA seq
DB search
MATSRRSVGNTSAQLEDDDAFVYVFDRRDSDVPEIKIPTGGLFTYVDFKARVREALEIKK
SENFVIATTNREEIKDDDSWDIIDKGDTLYILRNIQQELCAPAQQRVSYLPHYDTIVKGG
MYEYYASEGQNPLPYAFAELIDNALAATSNNLGSRSIEIRLHIDDGNPSKNCVYVIDNGK
GMTPRQLNNWAIYRLSKFIRKDKRGKVSFGGDDDEDRKQLQSSAYTPLSLNSDISYFGVG
GKQAIFFIGNSTRMITKPMDSKDVHELTISKEEFQMKEKNQEAIYSGYIRNRQPGDSSHI
PAEDEILGKVIEEEKNRDHFTVVEIHGINSQHMAYLKLHMKQWTRQLAHIYHYYIHGPRG
NTGTEDVSTGRTPSPFKNIDIEVKLFTKGHPQPRVVNLRDVDDDMQTQFLRTAANTFEFK
ASIEGSGVVEGVLRYHPFLYDRETYPSDANDPRIEPEVFDEHDYAINDRPARGRRPVFEC
YWNGRLIPYTFVENFDWCAEPKKSRTIPLECYNRISGVLFTNDHFQVSTNKLTFIDLEMR
LREKNTVYSHLVNGQERRTAIDREFVSWLKECHEQCDKQIRFSHFKGVVTRHDLPKHKQY
PWSVYEQVDWDGKAYKKGQLVRIQRTVPMLLGSIKRFLLYGENDNDVYATGGDIEVSQEP
KSLYNEEKIVPLCKLDRTCSSQAVRKHIDEEEAKLPSTLIVNWPEGYEVKQNEKRPAGKT
VGDIKVQIANKKGELISKLPGTAVVSKKLLVELKVVWHSSSGDEVMVSHISQHGKTWPYW
FRKMENIKNLGPHTLSLQVVLNESGATTYAGKQLPSHKIKFQVTEAEPEKFTVGMLDGPF
RVGIPFQIPLEFQDEFNNHTKASVKFNPELEASGLELSYESIQLKGFNLIIKGIVAIGLV
GGSAGKNFSMTIKVPGLEHDSQTLKIRLLPGPPHSLYVDSEEGHEIENGNPVSYNVEVRD
QAGNPTSDAKLVVMCKFTGVAGLPVYTLDCSGRGTGTITGDPINLKQFKHNQKITALIFL
QNHKQVSTVERPVKVMPSNRVSSIEVRIQNEDGKLTTMKSGSLTGKAGDLISNLSFSLFD
EAGRKLEIDDKLAAKVKVNWVQKIPINIVKEGRLPDIKIPADIQDTKYCQITVRSHITVH
NSTIDFSFTVVPTPTEPSQIKCHCNGPNQARIGETLESVIEVTIKDKFGNEITDLPKNTS
QEVQVSGEGLQSNEVKVTYSKGKFNIESVTLQGGKAGTRDLKVTWKDFSDFVQLELTAGP
PTKLSLPGWEEDETVTVLNENKLPRPLIVQLLDDADNEVHLADIKIQLAKDPKIKFVPFL
MPKKSYAQGQVDFGTVAVVGQRGSYEVEPRAFVSGETIHGPKLTILIQPDMTRPVEMKVE
YNKKALFQVGQTMPEFTIRILAEDEQPMKGAKAANLSMKLWKMDVRTQNTPPSRAVSFSP
ESLKHNPGVFIFKERKIPEVSGIHNLMLTYYDGKYELFSNVITVDVKPGAPVRLGSMEQP
GTPTVSNTHNAAARCVIRSLKIDLRDEFDNTAGLGYSGKINLEIMGPSGEAEVPSFVGGN
RTLQFNMNNGQCVLSNLTLAENSAGKDGYEYFLRCVVDCDLIPRNKSVPPLDIPFLFYND
AKKQSQMTTLSRQRDDLKAVIKTYKSLFETTEQLVKELKISVHEAQVEENKIREELRKLK
VPLVHLQNIPSVDKLMEEKSCNREQIRTSKRRTCGLAEAPLDNEVLGKIGHLGQIDEEDI
ARVLSWHMSADMDCVVTLTNKKAKEIYAQTNGKQQVLPIDSIFKKNLPDWRKPLPHVKYR
PSWHPRGNPIYARNLIIFPQNEEKCKIVFGMLLGDTLILDNLDHANEYRQELVKYTHCPT
ILTRQGDRIRSNGKFGGLMNKALSIDKLRGAVFSQPXPPLFHDLANQIDLLQNYRVAMEK
SGKAKSELAEQVTHMKLPEMQEKYKECREAESELKDVEQKLGVTMSTPRIPASERVKMRP
PPSSDEGPSASKRPKVTTNSTPQSTIANGNTTPSSASTSSILGTPTRKSGRLASMXPVTS
DDGKKRLRRT
NT seq
6153 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccaggagaagcgtggggaatacgagtgcacagttagaagatgatgatgca
ttcgtttatgtttttgatcgaagagacagcgatgttcccgaaatcaaaatcccaactgga
ggtcttttcacctacgtcgatttcaaagcacgcgtgcgtgaggcacttgagataaagaaa
tcagagaattttgttatcgctacaaccaacagagaagaaattaaagatgacgactcctgg
gatattatcgacaaaggagacaccctgtacatattgcggaacattcagcaggagttatgt
gcccctgcacagcaaagagtcagctatttaccacattacgataccattgtcaaaggtgga
atgtatgaatactacgcttcagaaggacaaaatccactcccctatgcctttgcggagcta
attgacaatgctttagctgccacatccaacaatctgggatctcgctccatagaaatacgc
ctgcacattgatgacggtaaccctagtaaaaactgcgtctacgtcatcgacaatggaaaa
gggatgacaccacggcaactcaacaactgggctatttatcgtctttcaaaatttatccgc
aaggacaaacgaggaaaagtaagctttgggggtgatgatgatgaagatagaaagcagctc
cagtcttcggcgtacaccccactctcactcaacagcgacatttcctactttggcgtcgga
ggaaaacaggccatcttctttataggaaactcaacacggatgataactaaaccgatggac
tctaaggatgtgcatgagctgacaatatccaaagaggagttccaaatgaaagagaaaaac
caagaggctatttatagtggttacatacgaaacagacaacctggagactcatcccacatc
cccgctgaggacgaaatcctcggaaaagtcatcgaggaagagaaaaaccgagaccacttt
acagtggtagaaatacacggaataaactcacagcacatggcctacctcaaactacacatg
aaacagtggacacgacaactcgcgcatatttatcattattacatccatggcccaagggga
aatacaggaacagaagatgtcagtacaggacgaacacccagtcccttcaaaaatatagat
attgaggtaaaattgtttactaaaggtcatccccagcctcgggtcgtgaatctacgcgac
gtcgacgatgacatgcagacacagttcctgcgtacagcagccaatacttttgagttcaag
gccagcattgaggggtcaggggtcgtagagggcgtgttgaggtatcaccccttcctgtat
gacagagagacctacccttccgacgccaatgatcccagaattgaacctgaagtgtttgat
gaacatgattatgccatcaatgatcgtccagccagagggagacgtccagtgtttgagtgt
tactggaacggccgacttatcccatacacatttgtagagaattttgattggtgtgctgag
cctaagaagagtagaactataccactggagtgctacaacagaatttctggtgtgttgttt
acaaatgaccatttccaagtgagtaccaataagctgaccttcatcgaccttgagatgagg
ttaagggaaaagaacacggtgtattcacatctcgttaacgggcaggagaggaggactgct
atagaccgtgagtttgtgtcgtggttgaaggaatgtcacgaacaatgtgataaacagatc
cgattctcacactttaagggtgtggtaacgcgccacgatctacccaaacataaacaatac
ccctggtctgtgtacgaacaggtcgactgggatggcaaggcctacaaaaagggacaactg
gtgaggatacagcgaacagttccgatgctgcttggtagcattaaacgtttcctactctac
ggagagaacgacaacgatgtgtacgcgacaggtggggacatagaagtcagtcaggaaccc
aagtccctgtacaacgaggagaaaatcgtgcccctctgcaagcttgaccgtacctgctct
tcacaggcggtccgcaaacacattgacgaggaggaggccaaattgccgtccactttgatt
gtgaactggcctgaagggtatgaggtgaaacagaacgagaaaaggccagcagggaagaca
gtgggtgatatcaaagttcagatagcgaacaaaaagggagagttgatcagcaagcttcca
ggaacagccgtcgtctctaagaaactgttggtggagctcaaggtcgtgtggcattccagc
agtggtgacgaagtaatggtgtctcatattagtcagcacggaaaaacttggccttactgg
ttcaggaaaatggaaaatataaagaaccttggaccccacactctatctttacaagtggtg
ctaaatgagagtggggctactacatacgctggcaaacaactaccatctcacaaaatcaag
ttccaagtcacagaggcagagcctgagaagtttactgtaggaatgttagacggaccgttc
agagtcggaattccgttccagattcctctcgagttccaggacgaattcaacaaccatacc
aaagcttctgttaagtttaatccagaactagaggcaagtggactagaactgagctatgag
tctatacagttgaaaggttttaaccttataatcaaaggaatcgtggccataggattagtg
ggtggaagtgctggcaagaatttttccatgactatcaaagtacctggactggaacatgac
agtcagacactgaagatccgacttttaccaggcccgcctcatagcctttatgtagacagt
gaggaaggccatgagatagagaacggtaaccctgtatcctataacgtggaggtgagggac
caggccggtaacccgactagcgacgccaaacttgtggtcatgtgtaagttcactggtgta
gcggggttacctgtctatacacttgactgttctgggcgtggtacaggaacaattaccggt
gatcccatcaacttaaaacagttcaaacacaaccagaaaatcactgccctcatcttcctc
cagaaccacaaacaggtgagcaccgtggagcgacccgtcaaggtgatgcctagcaaccgt
gtgtcaagtatcgaggtacggattcagaatgaagacggaaagttgaccacgatgaaatcc
ggatcattaacaggcaaagctggtgatcttatcagcaaccttagtttctcattgtttgac
gaagctggaagaaaactagaaatagacgacaagttggctgccaaagtaaaagtgaactgg
gtacagaaaattccaataaatattgtgaaggaaggacgtttacctgatataaagatcccc
gcggacatccaggacaccaaatactgtcagatcacagtcagatcacatatcacagtacac
aactcgaccatagactttagttttactgtcgttccgacccccacggagcccagtcagatc
aagtgtcactgtaatggacccaaccaggcccgtattggtgagacgctggagtctgtgatc
gaggtcacgattaaggacaagtttggcaacgagattacagatctgcctaaaaatacatct
caagaagtacaagtctctggtgaaggtcttcagtcaaatgaggtcaaggtcacctattca
aagggaaagttcaatatcgaatctgtaacgttacaaggaggaaaggccggaactcgcgat
ctgaaagtgacgtggaaagacttttcagatttcgtccagctagagctgactgcaggtcca
cctacaaagctttcattaccaggctgggaggaggatgagacagtgacagttttgaacgag
aacaaacttcctcgaccactcattgtacagctgttggatgacgctgataacgaagtccat
ctggctgacatcaaaatacaactggccaaggaccccaagatcaagtttgtacctttcctg
atgcccaagaaatcctatgcccaaggacaggtagactttgggactgttgctgtggtggga
caaagagggagttatgaagtagagccgagagcgtttgtgtctggcgagaccatccatggc
cctaagttaaccatcctgatacagccggacatgacgcggccggtagagatgaaggtggag
tacaacaagaaggccttgttccaggtcgggcagaccatgccagagttcacaatccgtatc
ctcgccgaggacgaacaaccaatgaaaggagctaaggctgcaaatctgtccatgaaactg
tggaaaatggacgtccgcacccagaacactcctccatctagggccgtatccttcagtcct
gagtcattaaaacataatccaggtgtattcatcttcaaggaacggaagattccagaggtg
tcgggaatacacaacctaatgctcacatattacgacggcaaatacgaactctttagcaat
gtgataacagtagatgtaaaacccggtgccccagtgagactcggatccatggaacagccc
ggaactccaaccgtatccaacacacataacgccgcagcacgctgtgttatacgtagtcta
aaaatagacctcagggatgagtttgacaatactgcaggcctcggctacagtggtaaaatt
aacctggagatcatgggtccttctggagaagcagaagtaccgtccttcgtcgggggtaac
aggacgctccagtttaacatgaacaatggccagtgtgtgttatcgaatttgacccttgcc
gaaaactctgcgggtaaagatggctatgaatatttcctgcgatgtgtagttgactgtgat
ctgattccccgtaataaaagtgttccaccgcttgatattccattcttattctataacgat
gccaagaaacagtcacagatgacaacgttgtcacggcaacgagacgaccttaaagctgtg
atcaaaacctacaaatccttgtttgaaaccacagaacaactagtcaaggagctcaaaatt
tctgtgcatgaggcccaagtggaggaaaacaagatccgagaagagctgaggaaactgaaa
gtgccactggtccacctacagaatatacccagtgtagacaagcttatggaagagaaatcc
tgtaatcgtgaacaaatccggacgtcaaagcgaagaacttgtggtctggccgaggcacca
ctggacaatgaggttctgggcaagatcggtcaccttggccagatagatgaagaggacata
gctcgggtgttatcgtggcacatgtcggcagacatggactgtgtcgttacactcactaat
aaaaaggctaaagaaatatatgcacaaaccaacggcaagcaacaagttttacccatcgac
tccatatttaagaaaaacctgccagattggcgaaaacctttaccccacgtgaagtacaga
ccgagctggcatccccgtggtaacccgatctatgccaggaatctcatcatattcccacag
aacgaagaaaaatgtaaaatagtatttggtatgctgttgggtgataccttaatcctagat
aatctggaccatgccaacgagtacaggcaggagctagtgaaatacactcactgccccacc
atcttaacgcgacaaggtgaccgtatccgtagtaacggcaagtttggtggtctaatgaac
aaggccctgtcaatagacaaactacgaggggccgtgtttagtcagcccntaccgccattg
tttcacgacctagccaatcaaatagatttgctccagaattatcgtgtggcgatggagaag
tcgggtaaggccaaaagtgaactggcagaacaagtgacacatatgaagctgccagaaatg
caggaaaagtacaaggaatgtcgcgaggctgagagtgaactcaaagatgtagaacaaaaa
ctaggtgtgacgatgtccacaccaagaatcccagcgtcagagagagtcaagatgcgccca
ccaccaagttcagatgaaggtccgtctgcgtccaagaggccgaaagtgaccactaactcc
acaccacaatccacaatcgctaacggcaacacaactccaagttctgcttccacgtctagt
attcttggcacgcctactaggaaaagtggacgactagcatctatgntccccgtgacgtcc
gacgatggaaagaaacgtttgagaagaacgtag
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integrated database retrieval system
