Argopecten irradians (bay scallop): 138314947
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Entry
138314947 CDS
T10542
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138314947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
airr03041
]
138314947
Spliceosome [BR:
airr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138314947
Complex C
U5 SnRNP specific factors
138314947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
EFL1
Roc
MMR_HSR1
Septin
Motif
Other DBs
NCBI-GeneID:
138314947
NCBI-ProteinID:
XP_069111703
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All DBs
Position
2:complement(26051934..26071039)
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AA seq
975 aa
AA seq
DB search
MDQELYDEFGNYVGPELDSDDDDNEDSDEDRDEPYGDYGADEDEDMDADDADDVPEMQVV
LHEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIAPVKKKKFSMVEQDLPETVYNMEF
LADLMDTPDLIRNVTLCGHLHHGKTSFVDCLVSQTHPEIDVKDDKDIRYTDTLFTEQERG
VSIKASPVTLVLPDSKNKSFLVNVFDTPGHVNFSDEVTAAFRISDGAVVFVDAAEGVMLN
TERLIKHAIQEKLPVTICINKIDRLILELKLPPTDAYFKLRHILEEINALISVYAEDEEN
KAVSPLLGNVCFASSYYRFCFTLGSFARIYGDTYGGINEKEFARRLWGDMYFNSKTRKFT
KKPPNSTCQRSFVEFILEPLYKLFSQVVGDVDECLPRMCDELGISLTKEEKKMNIRPLLR
IVCRRFFGDFTGFVDMCVEHLPSPAENAKNKIEHVYTGSSDSDLAEVMCTCDPDGPLMVH
TTKLFPTQDATSFHVYGRVISGTLYANQEVKILGENYSLQDEEDSRFGQVGRLWISEARY
KVEVNRVPAGNWVLIEGIDQPIVKTATITDVSGNDEVHIFRPLKFNTNSVMKIAVEPVNP
SELPKMLDGLRKVNKSYPLLNTKVEESGEHIVLGTGELYLDCVMHDLRKMYSEIDIKVAD
PVVSFCETVVETSSLKCFAETPNKRNKLTMIAEPLEKGLAEDIENEVVQITWPRKRLGEF
FQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVEKSLLGAVKDSIVQGFQWATREG
PLCDEPIRNVKFKILDAVIAQEPIHRGGGQIIPTARRVAYSAFLMATPRMMEPYNFVEVM
APADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFC
LSVFHHWQIVPGDPLDKSITIRPLEPQPATHLAREFMIKSRRRKGLSEDVSINKFFDDPM
LLELAKQDVMLNYPM
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggaattatatgatgagtttggtaactacgttggtccagaactggacagtgac
gacgatgacaacgaggacagtgacgaggatagagatgaaccctatggtgattatggagct
gatgaggatgaagatatggatgctgatgatgctgatgatgtaccagaaatgcaggttgtg
cttcatgaagataaaaagtactatcccacagcagaagaagtgtatggtccagaagtggag
acgatagttcaagaggaagatacacagccgctgacagaaccaatcatagctccagtgaag
aaaaagaagttttcaatggtggagcaagatttacctgaaactgtttataatatggagttt
ttggcagacttgatggacacaccagatctcatcagaaacgtcacactctgtggacattta
caccacggaaagacatccttcgttgactgcttggtatcacagacacacccagaaattgat
gtcaaagacgacaaagatatccgatacacagacacattgttcacagaacaagagagggga
gtgagtatcaaggcctctcctgtcacactggttttaccagactcaaagaacaagtccttc
ctcgtcaatgtttttgacacaccaggtcatgtaaacttctcagatgaagtgacagcagcc
ttcaggatcagtgatggcgctgtggtgtttgtggacgctgctgaaggggtgatgctgaac
actgagcgtctcattaagcacgctatccaggagaagctgccggtcactatctgtatcaat
aagattgatcgtctcatactggagcttaaactaccacctacagatgcttacttcaaatta
cgacacattctcgaggaaatcaacgcccttattagtgtttatgctgaagatgaggagaac
aaggcagtgtcaccgttactgggaaatgtttgttttgcgagttcctactacagattctgt
tttaccctgggttcttttgccagaatatatggtgatacttacggtggtatcaatgagaag
gagtttgcccggcggttgtggggagatatgtacttcaacagtaaaacgagaaagttcact
aagaagccacctaacagtacatgtcagagaagttttgtggagtttatactggagcctcta
tacaaactcttttcacaggttgttggggacgttgatgaatgcttgcccagaatgtgtgat
gaacttggaatctcactgacaaaggaagaaaagaaaatgaacatccgtcccttgttacgt
atcgtgtgtcgaaggttctttggagattttacaggttttgttgacatgtgcgtggaacac
ttacctagtcctgctgaaaatgcaaagaacaaaatagaacatgtctacacaggatctagt
gactcggatctggctgaggtcatgtgtacatgtgatcctgatggccccctcatggtacat
actaccaagctatttcctacgcaggatgctacaagtttccatgtatatggccgtgttatc
agtggaacgctgtatgctaatcaggaagttaagatccttggtgaaaattattcactccag
gacgaggaagactctcggtttggccaggtcggtcgactgtggatctctgaagctaggtac
aaagtggaggtaaaccgtgtaccggcggggaactgggtactgatagaaggtatagatcag
cctatagtgaagaccgccactataacggacgtgtcgggcaatgacgaggtacacattttc
cgacctttgaagttcaacacaaactctgtgatgaagatagctgtagaaccagtaaatcca
tcagaactacccaaaatgttggacggattaaggaaggtcaacaagagttaccccctcctg
aataccaaggtggaagagtcaggagaacatatagttttaggtacaggagaactctactta
gactgtgtgatgcacgacctgaggaaaatgtactctgagatcgacatcaaagtggcagac
cctgtcgtatcgttttgtgagacggtagtggaaacgtcatcactaaaatgttttgctgag
acgcctaacaaaagaaacaagctgacaatgattgctgaacctttagagaaaggactggca
gaggacatagaaaacgaggtagtacagatcacatggccaaggaaaaggcttggcgagttc
ttccagacaaaatatgactgggatttactggcagctcgttctatatgggcctttggacct
gatgctaccggtccaaatattctggtggatgacacattaccatctgaggtagaaaagagt
ctacttggtgctgtgaaggacagtatcgtacagggattccaatgggctacacgggaggga
cctctgtgtgacgaacccatcaggaatgtgaagtttaagatccttgatgctgtgatagca
caggagccaatacacaggggaggtggccagatcattccaacagccagaagagtagcttac
tcagcattcttaatggctacgccaagaatgatggagccgtacaattttgtcgaggtgatg
gcgcctgctgattgtgtgtcagctgtgtatactgtcctggctcgaaggagaggtcacgtt
acccaggatgcaccagtaccaggttcaccactctacacaatcaaggcctttatcccagct
attgattctttcggatttgagaccgaccttcggacacatactcaaggtcaagctttttgt
ttgtcggtctttcatcattggcagatagtacctggagatcccctcgacaaaagtatcacc
atccgacccttggagccacagccagccacacatctggccagagaattcatgatcaagtct
cggagaagaaagggtctaagtgaagatgtcagtatcaacaagttctttgacgatcctatg
ttgttggagttggccaaacaggacgtcatgctcaactacccaatgtga
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