Argopecten irradians (bay scallop): 138318926
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Entry
138318926 CDS
T10542
Name
(RefSeq) agrin-like isoform X1
KO
K06254
agrin
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr04512
ECM-receptor interaction
airr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138318926
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
138318926
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
airr00535
]
138318926
Proteoglycans [BR:
airr00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
138318926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kazal_2
Laminin_G_1
Laminin_G_2
Kazal_1
EGF_laminin
Laminin_G_3
EGF
Kazal_CFAI
hEGF
EB
Motif
Other DBs
NCBI-GeneID:
138318926
NCBI-ProteinID:
XP_069117845
LinkDB
All DBs
Position
1:15744760..15921767
Genome browser
AA seq
1711 aa
AA seq
DB search
MQRENFSSNLMKYSVEEDEYSTCAEKMMISPAGLCCQRCWRKNRLAILCSLFGLFWCCLA
AVMILLYTTLAEDADNMYQQQQQDKNLPYLPSPESLEYVCRGFLCPWGGVCKVNRTTSKP
YCGCIEECLTQGRTSVVCGTNGVTYVSKCWLQKSSCERRIRVRVRHKDKCYNVPEPCAGF
VCEPPKVCQLASQTDRRPVCRCAETCPDTLKFVCGTDGATYSNLCRLEMEACRTMRDIRL
HHSGKCQAVTGPNVNIVVQDEVEAYQGTNPCRKITCGFGQECTINKNGLAKCQCPSPCEP
IVQQVCGSDGYTYDNECELRRDSCRQKKNVELFHHGPCGTGEISCRGYTCHNDAICQMRG
GQPSCECPVCSEEFEPVCGTDGRTYPNECKLRLTNCDERTSTQIWHQGRCRGCGDQDPCE
FYSVCDKSNDSPTCVCPRECKQNQVAKLCGSDGKTYRNECELMLESCRLQQLIIVASIGE
CELCKGTTCNFGARCENGTCVCPLTCPRTLEPVCASDRKTYENECKMKRAACVQNVDLYV
MDNRPCENEVDTVYSGGGSGDTPDDMPVCDEILCKYGGECQLNEQGTYACICNFNCQAVR
SPVCGSDGRTYGNLCEMQYEACQEQREISLVSNDDCIDFTEEPCDGNPPLEPPHPFEYTC
SSTMNNCPPNSYCHARFGKCCREADCTCYEKGSISITCNPVTRECSCKPGVGGKQCNRCL
PGYWGLALNQDSVGCVPCNCHTLGRLRGDCDQSTGKCFCRPKIRGSKCDRCPNGNLIVSR
YGCPEDPNVLPIPRTCREVQCGFGGTCVEFDNRAFCDCESLPCFAEDWPRSVTVCGSDLN
TYESECELKRNACNQQTNITVVFTGECGIRRRTTPSPIMNGHPRRTPHYRATTPTPAQHE
RPRSSYKTTRHAGHPPPEASHEMTRTTARPVTNPPPLVEGKILDICLDDTYCSVQNSHCH
LGICTCWEGYIPTLDNTHCSEVKQVKPGNTRIHDQSACSINPCRNQGLCVPDDLLGYRCL
CPLGKTGPNCKRDARIRVPSFTGMSYMSVTEINKANDDLTIEMSFRSLNTDGLLLFSSQF
ANGTGDFISITLVDQYVEFRFDLGSGIAIIRSLEKIPLNQDCHVIASRFDREGMLIVNAS
PGVSQMSPASLVSLDLKGPLYIGFLPEHANLGLERAGVDVGFVGCVMTLQASTSHLAKVY
DLTYPQVRPDIYEARDIGECGQNPCSSLPCMHGGTCLMSDAEIFTCLCEEGYSGNNCEIV
LNPCVSAVCQHGATCRQTLEGYECVCPDNREGEFCEYEKLHKIFVPEFNGSSYIQCPLGD
VSSTALSLKVWFMTRKPNGVLMYASQFSRGLGDFVSVNIVDLHIEFRFNMGSGTVVIRSD
EKIEINKWHEVYVQKVDRAGTLVIDSSEERQTMAESQGGLTELNLQERNLFLGGFQNNNT
IPADSNILYNFTGVIQRIYINGRLIDNIMEVARDRVNIKEYLGNPCNVNPCLNGGVCVPK
LNAADCKCPMKYLGQRCEKRSDAINKDLPVKFDGRTYLRYPNEISHQVPGQRTNKYTIKF
RETRGGGLILFQQGTLPVLDDYFAIAVVDGSVELSYNLGGQTEEGLHIIRSTVAVDDGLW
HTLVANRDERQATLQVDDERPVKGMSSEGASQLDTDGNLWIGGKSSLPLGLPDQYYHGFR
GCIEEVYINGRKLQMIDHRSDQRSPIVRFCV
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgcagagagaaaatttcagctcgaatttaatgaaatactcggtggaagaggatgaatat
tctacatgtgcggagaagatgatgataagtccagcgggattatgttgtcaacgatgttgg
cgaaaaaatcgcctcgccattctgtgttccctttttggattattttggtgttgtttggcg
gcggtgatgattttactgtatacaacattagcggaagacgccgacaacatgtatcaacaa
cagcagcaggacaaaaatctaccttatttaccgtcccctgaatcactagaatatgtgtgt
cgtggatttttgtgtccctggggcggggtatgtaaggtgaatcggacgacgtccaagccc
tactgtgggtgtatagaggagtgcctaacccaggggaggacgtctgtggtctgtggaact
aatggtgtgacgtatgtcagcaaatgttggctacagaaatccagttgtgagagaagaatc
agagtgcgtgtccgtcacaaagacaagtgctataatgtcccagaaccatgtgctggattc
gtatgtgaaccacctaaagtgtgccagttggcgagtcagactgatcgtcggcctgtgtgt
cgttgtgctgagacgtgccccgacacattgaaatttgtctgcggaaccgacggggcaaca
tacagtaacttgtgtcggcttgaaatggaggcttgtcgcacgatgcgtgacattcgtctt
catcattccggaaaatgtcaagcagtaacggggcccaatgtaaacattgttgttcaggac
gaagtagaagcatatcagggcacaaacccttgtaggaaaataacatgtggattcggtcag
gaatgtacaatcaacaaaaacggacttgctaaatgtcagtgcccttccccttgtgaacca
attgtacagcaagtctgtggctctgatggttacacatatgacaacgaatgtgagctgagg
cgagattcatgtcgtcagaaaaaaaatgtggaacttttccatcacggtccatgtggtacg
ggggaaatttcctgccgaggttacacttgtcataacgatgctatctgtcagatgagagga
ggacaaccgtcctgtgaatgtcctgtctgttctgaagaatttgaacccgtgtgtggaaca
gacggacggacatatcccaatgagtgtaaacttcgtctcaccaactgtgatgaacgaaca
agtacacagatctggcatcaaggcagatgtaggggatgtggggaccaggacccgtgtgaa
ttttattctgtctgtgacaaaagcaatgacagcccaacttgtgtctgtccaagggaatgt
aaacagaaccaggtagcgaaactatgtggatcagatggtaaaacctacaggaatgaatgt
gagctgatgttagaatcctgtcgcctccaacagctcatcattgtggcctccataggcgaa
tgtgaactttgcaaaggaaccacgtgtaactttggtgcacgttgtgaaaatggtacatgt
gtctgtccgctgacctgtccgagaacgctggaaccagtgtgcgcaagtgataggaaaaca
tacgaaaatgagtgtaaaatgaaacgtgccgcctgcgtgcagaatgtcgacttgtatgtg
atggacaatcgaccttgtgaaaacgaagttgataccgtttactctggaggtgggtcaggt
gacaccccagacgacatgccagtctgtgacgagatcttgtgtaaatatggcggggagtgc
cagctgaacgaacagggaacgtatgcatgtatctgtaacttcaactgccaagcagtcaga
tctcctgtttgtggttctgatggtaggacctatggaaatctatgtgaaatgcaatatgag
gcgtgtcaagagcaaagggagataagtctagtctcaaatgatgattgtattgacttcaca
gaagaaccctgtgatggtaacccacccttggaacctccgcacccgttcgagtatacatgt
tcctccaccatgaacaactgtccaccgaatagctactgccatgcacgattcggcaaatgt
tgccgagaagcggattgcacctgttacgagaagggatccatcagtatcacctgtaatcct
gtaacacgtgaatgtagctgtaaacctggagtcggagggaaacagtgtaaccgctgtctc
cctggttactggggattagctctcaaccaggacagtgtcggctgtgtcccttgcaactgt
cacaccttggggcgacttcgcggagactgtgaccaaagtacaggaaagtgcttttgtcgg
cccaaaatacgcggatcaaaatgtgaccgctgtccgaacggcaatttgatcgtgtccaga
tatggttgtccagaagatccaaatgtgttgcctatcccgagaacatgtcgagaggtgcag
tgcggttttggtggtacttgtgtggagtttgataaccgagccttctgtgactgcgaatcg
ttaccttgtttcgccgaggactggccacggtcagtgacagtgtgtggaagtgatctaaac
acatacgagtccgagtgtgaactaaaaaggaatgcctgcaaccaacaaacaaacatcacc
gtcgtgttcaccggcgaatgtggcatccgaaggagaacaaccccatcgccgattatgaat
ggtcatccccgccgaacgccccactacagggccaccacaccaacaccagcacaacacgaa
cggccgcgcagtagttataaaacaactcgccatgctgggcatccccctccagaggccagc
catgagatgacacggacaacagctagacccgtgaccaaccctccacctcttgtagaaggt
aaaatcttggacatttgcttagatgacacatactgcagtgtccaaaacagccattgtcac
ctgggaatatgtacgtgctgggagggttacataccaacattggataacactcactgctca
gaggtgaagcaggttaaacccggtaatactcgtattcatgaccaatcagcctgctccatc
aacccttgtcgtaaccaagggttatgtgtcccagacgatctccttggttaccggtgtctt
tgccctctaggtaaaactggacccaactgtaaaagagatgcgcgtatccgtgtcccctcc
ttcacggggatgtcctacatgtctgtgacggagataaataaggccaatgacgacctcacc
attgaaatgagtttccggtccctcaacaccgacgggcttttgttatttagtagtcagttt
gcaaatggtaccggcgactttatctccatcacgcttgtagaccaatatgtagagttcagg
ttcgaccttggtagcggtattgctattattagaagtttggagaaaattcctttgaaccag
gactgccatgtgattgccagtcgcttcgatcgcgaggggatgttgattgtgaatgcttct
cctggagtttcccagatgagcccagcatcgcttgtctctctggatctgaaaggaccacta
tacattggctttctccccgaacatgcaaaccttggcctagaacgtgctggtgtagatgtg
gggtttgtgggctgtgtaatgaccctccaggctagtacatcccacctggctaaagtttac
gatctgacatatccccaagttcgcccagacatctacgaggcaagggatataggtgagtgt
ggacagaatccatgttctagcctaccctgtatgcacggagggacttgtctgatgtcggac
gctgagattttcacatgtctttgtgaagaaggatattcaggcaacaactgtgaaatcgtt
ttgaacccatgtgtcagtgcagtgtgtcagcatggggcgacatgccgtcagacactggag
ggatacgagtgtgtctgtcccgacaaccgggagggggagttctgtgaatatgaaaagtta
cacaagatatttgtgcccgaattcaacggtagttcatacatccagtgtccactcggcgat
gtcagtagtaccgcactttctcttaaagtctggttcatgacacgaaagcctaacggtgta
ctgatgtatgctagtcagttttcccgcggactaggcgactttgtttctgtgaacatagtg
gatctacacattgagttcagattcaacatgggtagcggaactgtcgtcatcaggagcgac
gagaaaatagaaatcaataagtggcatgaagtgtatgtccagaaagttgacagggctggg
actcttgtaattgacagtagtgaagagcgacagacgatggcggaatcccagggcggacta
acagagctgaatcttcaagaaagaaatctgttcctaggaggttttcaaaacaacaacact
atccctgctgactctaacatcctgtacaactttactggcgttatacaacggatttatata
aacgggcgccttatagacaacatcatggaggtggctcgggatagagtaaacatcaaggag
tatctgggaaacccttgtaatgttaatccatgccttaacggcggtgtgtgtgttcccaaa
cttaacgcagctgactgcaagtgtccgatgaaataccttggccagcgctgtgagaaacgt
tcagacgctataaacaaagatttacctgtgaaatttgatgggcgcacgtatcttcgatat
ccaaatgaaatttctcatcaagtccctggccagcgtactaacaaatacacgattaagttc
cgtgagacgcggggaggcggcctcatcttgttccaacaaggtacccttcctgtactcgat
gactacttcgccattgcagtggtggacggtagtgtggagcttagctacaatttgggcggt
cagacagaagaaggtcttcacattatcaggtctacggtagcggtggacgacggactttgg
catactttagtggcgaacagggatgagagacaggccacactacaggtagacgatgagaga
ccagtgaagggcatgtcatctgaaggagcgtcacagctggatactgacggaaacctgtgg
ataggtggaaaaagcagcctccctcttggcctacctgaccaatactatcatggctttaga
ggatgtattgaagaagtttacattaatggccgtaaacttcagatgattgaccaccgcagt
gaccaaagatcccctattgtaaggttctgtgtatga
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